KEGG   PATHWAY: qsu03430
Entry
qsu03430                    Pathway                                
Name
Mismatch repair - Quercus suber (cork oak)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
qsu03430  Mismatch repair
qsu03430

Other DBs
GO: 0006298
Organism
Quercus suber (cork oak) [GN:qsu]
Gene
111989695  uncharacterized protein LOC111989695 isoform X1 [KO:K07456]
111996966  single-stranded DNA-binding protein, mitochondrial [KO:K03111]
111991818  single-stranded DNA-binding protein, mitochondrial-like [KO:K03111]
111996357  DNA mismatch repair protein PMS1 isoform X1 [KO:K10858]
112041116  DNA mismatch repair protein MLH1-like [KO:K08734]
112006841  DNA mismatch repair protein MSH6 [KO:K08737]
112030170  LOW QUALITY PROTEIN: DNA mismatch repair protein MSH7 [KO:K08737]
112024698  DNA mismatch repair protein MSH2 [KO:K08735]
111999023  DNA mismatch repair protein MSH3 isoform X1 [KO:K08736]
112005523  DNA mismatch repair protein MLH3 isoform X1 [KO:K08739]
112040745  replication factor C subunit 1 isoform X1 [KO:K10754]
111999495  replication factor C subunit 2 [KO:K10755]
112038286  replication factor C subunit 2 [KO:K10755]
112040579  replication factor C subunit 3 [KO:K10756]
112035701  replication factor C subunit 3 [KO:K10756]
112003142  proliferating cell nuclear antigen-like [KO:K04802]
112012131  proliferating cell nuclear antigen-like [KO:K04802]
112012118  proliferating cell nuclear antigen [KO:K04802]
112013999  exonuclease 1 [KO:K10746] [EC:3.1.-.-]
112038942  exonuclease 1-like [KO:K10746] [EC:3.1.-.-]
112037099  exonuclease 1 [KO:K10746] [EC:3.1.-.-]
112035587  uncharacterized protein LOC112035587 [KO:K10746] [EC:3.1.-.-]
112023528  replication protein A 70 kDa DNA-binding subunit A [KO:K07466]
112020147  replication protein A 70 kDa DNA-binding subunit A-like [KO:K07466]
112017680  replication protein A 70 kDa DNA-binding subunit B [KO:K07466]
112017407  replication protein A 32 kDa subunit A-like [KO:K10739]
112025316  replication protein A 32 kDa subunit B-like [KO:K10739]
112010841  replication protein A 14 kDa subunit B-like [KO:K10740]
112025387  replication protein A 14 kDa subunit B-like [KO:K10740]
112011411  DNA polymerase delta catalytic subunit isoform X1 [KO:K02327] [EC:2.7.7.7]
112015495  DNA polymerase delta small subunit [KO:K02328]
112021016  DNA polymerase delta subunit 3 [KO:K03504]
111988029  DNA polymerase delta subunit 4-like [KO:K03505]
111997209  DNA polymerase delta subunit 4-like [KO:K03505]
111994202  DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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