KEGG   PATHWAY: rac00020
Entry
rac00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhodoferax antarcticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rac00020  Citrate cycle (TCA cycle)
rac00020

Module
rac_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rac00020]
rac_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rac00020]
rac_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rac00020]
rac_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rac00020]
rac_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rac00020]
Other DBs
GO: 0006099
Organism
Rhodoferax antarcticus [GN:rac]
Gene
RA876_05240  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
RA876_11000  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RA876_05290  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
RA876_08955  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RA876_10895  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
RA876_10890  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
RA876_07710  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RA876_10330  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RA876_10885  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RA876_01625  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
RA876_01620  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
RA876_06760  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
RA876_05255  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RA876_05250  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RA876_05265  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
RA876_05260  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
RA876_10965  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
RA876_10970  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
RA876_10975  fumarate reductase subunit C [KO:K00246]
RA876_10980  fumarate reductase subunit D [KO:K00247]
RA876_06920  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
RA876_12360  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RA876_05275  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RA876_17750  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
RA876_08410  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
RA876_10320  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
RA876_10325  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
RA876_08615  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
RA876_08620  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
RA876_08610  2-oxoacid:acceptor oxidoreductase [KO:K00172] [EC:1.2.7.1]
RA876_18870  pyruvate ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rac00010  Glycolysis / Gluconeogenesis
rac00053  Ascorbate and aldarate metabolism
rac00061  Fatty acid biosynthesis
rac00071  Fatty acid degradation
rac00190  Oxidative phosphorylation
rac00220  Arginine biosynthesis
rac00250  Alanine, aspartate and glutamate metabolism
rac00280  Valine, leucine and isoleucine degradation
rac00350  Tyrosine metabolism
rac00470  D-Amino acid metabolism
rac00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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