KEGG   PATHWAY: rban00630
Entry
rban00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium bangladeshense
Class
Metabolism; Carbohydrate metabolism
Pathway map
rban00630  Glyoxylate and dicarboxylate metabolism
rban00630

Module
rban_M00012  Glyoxylate cycle [PATH:rban00630]
rban_M00621  Glycine cleavage system [PATH:rban00630]
rban_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rban00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium bangladeshense [GN:rban]
Gene
J2J98_03565  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
J2J98_19175  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
J2J98_20890  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
J2J98_00265  malate synthase G [KO:K01638] [EC:2.3.3.9]
J2J98_19810  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J2J98_09970  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
J2J98_10895  citrate synthase [KO:K01647] [EC:2.3.3.1]
J2J98_10900  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
J2J98_20065  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
J2J98_28080  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
J2J98_02710  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
J2J98_20435  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
J2J98_22160  thiolase family protein [KO:K00626] [EC:2.3.1.9]
J2J98_26370  thiolase family protein [KO:K00626] [EC:2.3.1.9]
J2J98_20440  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
J2J98_08060  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
J2J98_11175  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
J2J98_11205  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
J2J98_27345  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
J2J98_29275  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
J2J98_03960  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
J2J98_03965  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
J2J98_03970  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
J2J98_00705  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
J2J98_00910  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
J2J98_23275  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
J2J98_04145  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
J2J98_11220  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
J2J98_11925  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
J2J98_03525  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
J2J98_06580  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
J2J98_10535  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
J2J98_14575  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
J2J98_15630  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
J2J98_26155  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
J2J98_07520  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
J2J98_11260  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
J2J98_11250  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
J2J98_25820  DUF1989 domain-containing protein [KO:K00605] [EC:2.1.2.10]
J2J98_25865  aminomethyltransferase family protein [KO:K00605] [EC:2.1.2.10]
J2J98_28105  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J2J98_10030  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J2J98_19765  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J2J98_11255  gcvH; glycine cleavage system protein GcvH [KO:K02437]
J2J98_16985  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
J2J98_21370  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
J2J98_21375  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
J2J98_09105  glycerate kinase [KO:K11529] [EC:2.7.1.165]
J2J98_23260  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
J2J98_18505  2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
J2J98_19625  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
J2J98_19635  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
J2J98_19640  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
J2J98_19645  formate dehydrogenase subunit gamma [KO:K00127]
J2J98_01135  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
J2J98_25875  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
J2J98_28550  formamidase [KO:K01455] [EC:3.5.1.49]
J2J98_24345  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rban00010  Glycolysis / Gluconeogenesis
rban00020  Citrate cycle (TCA cycle)
rban00030  Pentose phosphate pathway
rban00053  Ascorbate and aldarate metabolism
rban00071  Fatty acid degradation
rban00230  Purine metabolism
rban00250  Alanine, aspartate and glutamate metabolism
rban00260  Glycine, serine and threonine metabolism
rban00620  Pyruvate metabolism
rban00750  Vitamin B6 metabolism
rban00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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