KEGG   PATHWAY: reh00020
Entry
reh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cupriavidus necator H16
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
reh00020  Citrate cycle (TCA cycle)
reh00020

Module
reh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:reh00020]
reh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:reh00020]
reh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:reh00020]
reh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:reh00020]
reh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:reh00020]
Other DBs
GO: 0006099
Organism
Cupriavidus necator H16 [GN:reh]
Gene
H16_A1229  h16_A1229; citrate synthase [KO:K01647] [EC:2.3.3.1]
H16_A2627  cisY; citrate synthase [KO:K01647] [EC:2.3.3.1]
H16_B0414  h16_B0414; citrate synthase [KO:K01647] [EC:2.3.3.1]
H16_B2211  h16_B2211; citrate synthase [KO:K01647] [EC:2.3.3.1]
H16_B0357  h16_B0357; citrate synthase [KO:K01647] [EC:2.3.3.1]
H16_A2638  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
H16_B0568  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
H16_A3056  icd1; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
H16_B1931  icd2; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
H16_B1016  icd3; isocitrate dehydrogenase [NAD] [KO:K00030] [EC:1.1.1.41]
H16_A2325  odhA; 2-Oxoglutarate dehydrogenase (E1) [KO:K00164] [EC:1.2.4.2]
H16_A2324  odhB; Dihydrolipoamide S-succinyltransferase (E2) [KO:K00658] [EC:2.3.1.61]
H16_A1377  pdhL; dihydrolipoamide dehydrogenase (E3) component ofpyruvate dehydrogenase [KO:K00382] [EC:1.8.1.4]
H16_A2323  odhL; dihydrolipoamide dehydrogenase (E3) [KO:K00382] [EC:1.8.1.4]
H16_B1098  h16_B1098; Pyridinenucleotide-disulphide (lipoamid) oxidoreductase [KO:K00382] [EC:1.8.1.4]
H16_A0548  sucD; Succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
H16_A0547  sucC; Succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
H16_A1358  h16_A1358; Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
H16_A2630  sdhA; succinate dehydrogenase (flavoprotein subunit) [KO:K00239] [EC:1.3.5.1]
H16_A2629  sdhB; succinate dehydrogenase (Fe-S protein subunit) [KO:K00240] [EC:1.3.5.1]
H16_A2632  sdhC; succinate dehydrogenase (cytochrome b subunit) [KO:K00241]
H16_A2631  sdhD; succinate dehydrogenase (hydrophobic anchor subunit) [KO:K00242]
H16_A2528  fumA; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
H16_B0103  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
H16_A2634  mdh1; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H16_A1251  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
H16_A3711  pepck; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
H16_A1374  pdhA1; pyruvate dehydrogenase complex, dehydrogenase (E1) component [KO:K00163] [EC:1.2.4.1]
H16_B1300  aceE; pyruvate dehydrogenase complex, dehydrogenase (E1) component (lipoamide) [KO:K00163] [EC:1.2.4.1]
H16_A1753  pdhA2; pyruvate dehydrogenase complex, dehydrogenase (E1) component [KO:K00163] [EC:1.2.4.1]
H16_A1375  pdhB; dihydrolipoamide acetyltransferase (E2) component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
H16_B0146  acoC; Dihydrolipoamide S-acetyltransferase component of acetoin dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
reh00010  Glycolysis / Gluconeogenesis
reh00053  Ascorbate and aldarate metabolism
reh00061  Fatty acid biosynthesis
reh00071  Fatty acid degradation
reh00190  Oxidative phosphorylation
reh00220  Arginine biosynthesis
reh00250  Alanine, aspartate and glutamate metabolism
reh00280  Valine, leucine and isoleucine degradation
reh00350  Tyrosine metabolism
reh00470  D-Amino acid metabolism
reh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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