KEGG   PATHWAY: rfr00230
Entry
rfr00230                    Pathway                                
Name
Purine metabolism - Rhodoferax ferrireducens
Class
Metabolism; Nucleotide metabolism
Pathway map
rfr00230  Purine metabolism
rfr00230

Module
rfr_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:rfr00230]
rfr_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:rfr00230]
rfr_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:rfr00230]
rfr_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:rfr00230]
rfr_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rfr00230]
Other DBs
GO: 0006163 0042278
Organism
Rhodoferax ferrireducens [GN:rfr]
Gene
Rfer_1507  NUDIX hydrolase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
Rfer_1145  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
Rfer_2240  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Rfer_1660  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Rfer_0392  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Rfer_2683  amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
Rfer_2076  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
Rfer_1649  phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
Rfer_3559  phosphoribosylglycinamide formyltransferase 2 [KO:K08289] [EC:6.3.1.21]
Rfer_2420  phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
Rfer_2512  phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
Rfer_0196  phosphoribosylaminoimidazole carboxylase [KO:K01589] [EC:6.3.4.18]
Rfer_0197  phosphoribosylaminoimidazole carboxylase, catalytic subunit [KO:K01588] [EC:5.4.99.18]
Rfer_0203  phosphoribosylaminoimidazole-succinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
Rfer_4049  Adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
Rfer_1582  IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
Rfer_4239  adenine phosphoribosyltransferase [KO:K00759] [EC:2.4.2.7]
Rfer_0734  5-nucleotidase [KO:K01081] [EC:3.1.3.5]
Rfer_2782  3'-nucleotidase / exopolyphosphatase / 5'-nucleotidase [KO:K03787] [EC:3.1.3.5 3.1.3.6]
Rfer_2688  protein of unknown function DUF1255 [KO:K09913] [EC:2.4.2.1 2.4.2.2]
Rfer_2564  protein of unknown function DUF152 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
Rfer_2288  inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
Rfer_2311  nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
Rfer_1630  Ham1-like protein [KO:K01519] [EC:3.6.1.66]
Rfer_2287  GMP synthase (glutamine-hydrolyzing) [KO:K01951] [EC:6.3.5.2]
Rfer_3037  guanosine monophosphate reductase [KO:K00364] [EC:1.7.1.7]
Rfer_3295  guanine deaminase [KO:K01487] [EC:3.5.4.3]
Rfer_3147  guanylate kinase [KO:K00942] [EC:2.7.4.8]
Rfer_2197  ribonucleotide reductase large subunit [KO:K00525] [EC:1.17.4.1]
Rfer_3011  ribonucleotide reductase large subunit [KO:K00525] [EC:1.17.4.1]
Rfer_3347  Ribonucleoside-diphosphate reductase [KO:K00525] [EC:1.17.4.1]
Rfer_3348  Ribonucleoside-diphosphate reductase [KO:K00526] [EC:1.17.4.1]
Rfer_0368  Ribonucleoside-triphosphate reductase, anaerobic [KO:K21636] [EC:1.1.98.6]
Rfer_2927  Deoxyguanosinetriphosphate triphosphohydrolase [KO:K01129] [EC:3.1.5.1]
Rfer_3149  (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA [KO:K01139] [EC:2.7.6.5 3.1.7.2]
Rfer_2032  Ppx/GppA phosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
Rfer_2071  (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA [KO:K00951] [EC:2.7.6.5]
Rfer_2284  putative adenylate/guanylate cyclase [KO:K01768] [EC:4.6.1.1]
Rfer_2296  Adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
Rfer_3569  AMP nucleosidase [KO:K01241] [EC:3.2.2.4]
Rfer_3297  adenosine deaminase [KO:K21053] [EC:3.5.4.2]
Rfer_3158  Adenylate kinase [KO:K00939] [EC:2.7.4.3]
Rfer_3027  bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [KO:K01525] [EC:3.6.1.41]
Rfer_2460  sulfate adenylyltransferase subunit 1 [KO:K00956] [EC:2.7.7.4]
Rfer_2459  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
Rfer_3402  urease, alpha subunit [KO:K01428] [EC:3.5.1.5]
Rfer_3400  urease, beta subunit [KO:K01429] [EC:3.5.1.5]
Rfer_3399  urease, gamma subunit [KO:K01430] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
rfr00030  Pentose phosphate pathway
rfr00220  Arginine biosynthesis
rfr00250  Alanine, aspartate and glutamate metabolism
rfr00260  Glycine, serine and threonine metabolism
rfr00340  Histidine metabolism
rfr00630  Glyoxylate and dicarboxylate metabolism
rfr00730  Thiamine metabolism
rfr00740  Riboflavin metabolism
rfr00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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