KEGG   PATHWAY: rfr00630
Entry
rfr00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhodoferax ferrireducens
Class
Metabolism; Carbohydrate metabolism
Pathway map
rfr00630  Glyoxylate and dicarboxylate metabolism
rfr00630

Module
rfr_M00012  Glyoxylate cycle [PATH:rfr00630]
rfr_M00621  Glycine cleavage system [PATH:rfr00630]
Other DBs
GO: 0046487 0043648
Organism
Rhodoferax ferrireducens [GN:rfr]
Gene
Rfer_1335  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Rfer_2698  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Rfer_2581  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
Rfer_0388  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
Rfer_3581  Malate synthase G [KO:K01638] [EC:2.3.3.9]
Rfer_2403  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Rfer_1803  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Rfer_1796  citrate synthase [KO:K01647] [EC:2.3.3.1]
Rfer_2366  aconitase [KO:K01681] [EC:4.2.1.3]
Rfer_1806  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Rfer_2273  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rfer_2385  Acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
Rfer_2561  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rfer_1871  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rfer_2753  Acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
Rfer_3839  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rfer_0272  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rfer_1000  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
Rfer_3283  Thiolase [KO:K00626] [EC:2.3.1.9]
Rfer_2594  Acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
Rfer_2560  3-oxoacyl-[acyl-carrier-protein] reductase [KO:K00023] [EC:1.1.1.36]
Rfer_2802  Carbamoyl-phosphate synthase L chain, ATP-binding [KO:K01965] [EC:6.4.1.3]
Rfer_2803  Propionyl-CoA carboxylase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
Rfer_0868  Carbamoyl-phosphate synthase L chain, ATP-binding [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
Rfer_2805  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
Rfer_0606  FAD linked oxidase-like [KO:K00104] [EC:1.1.99.14]
Rfer_0480  FAD linked oxidase-like [KO:K11472] [EC:1.1.99.14]
Rfer_0481  protein of unknown function DUF224, cysteine-rich protein [KO:K11473] [EC:1.1.99.14]
Rfer_3829  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Rfer_2144  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Rfer_3611  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Rfer_1722  HAD-superfamily hydrolase subfamily IA, variant 3 [KO:K01091] [EC:3.1.3.18]
Rfer_3737  Haloacid dehalogenase-like hydrolase [KO:K01091] [EC:3.1.3.18]
Rfer_1391  ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
Rfer_0350  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Rfer_2979  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
Rfer_2658  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Rfer_3021  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
Rfer_3019  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Rfer_2214  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rfer_2319  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Rfer_0181  pyridine nucleotide-disulphide oxidoreductase dimerisation protein [KO:K00382] [EC:1.8.1.4]
Rfer_3020  glycine cleavage system H protein [KO:K02437]
Rfer_2329  glycerate 2-kinase [KO:K11529] [EC:2.7.1.165]
Rfer_0845  Tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Rfer_2247  Tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Rfer_0440  Tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
Rfer_2061  2-keto-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Rfer_3261  Twin-arginine translocation pathway signal [KO:K00123] [EC:1.17.1.9]
Rfer_3269  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Rfer_3270  NADH dehydrogenase (quinone) [KO:K22515] [EC:1.17.1.9]
Rfer_3260  4Fe-4S ferredoxin, iron-sulfur binding [KO:K00124]
Rfer_3258  formate dehydrogenase gamma subunit [KO:K00127]
Rfer_0609  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Rfer_4155  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rfr00010  Glycolysis / Gluconeogenesis
rfr00020  Citrate cycle (TCA cycle)
rfr00030  Pentose phosphate pathway
rfr00053  Ascorbate and aldarate metabolism
rfr00071  Fatty acid degradation
rfr00230  Purine metabolism
rfr00250  Alanine, aspartate and glutamate metabolism
rfr00260  Glycine, serine and threonine metabolism
rfr00620  Pyruvate metabolism
rfr00710  Carbon fixation by Calvin cycle
rfr00750  Vitamin B6 metabolism
rfr00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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