KEGG   PATHWAY: rge00630
Entry
rge00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rubrivivax gelatinosus
Class
Metabolism; Carbohydrate metabolism
Pathway map
rge00630  Glyoxylate and dicarboxylate metabolism
rge00630

Module
rge_M00012  Glyoxylate cycle [PATH:rge00630]
rge_M00621  Glycine cleavage system [PATH:rge00630]
Other DBs
GO: 0046487 0043648
Organism
Rubrivivax gelatinosus [GN:rge]
Gene
RGE_26170  aceA; isocitrate lyase aceA [KO:K01637] [EC:4.1.3.1]
RGE_18530  acsA; acetyl-coenzyme A synthetase AcsA [KO:K01895] [EC:6.2.1.1]
RGE_18640  acsA; acetyl-coenzyme A synthetase AcsA [KO:K01895] [EC:6.2.1.1]
RGE_45930  glcB; malate synthase G GlcB [KO:K01638] [EC:2.3.3.9]
RGE_12240  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
RGE_12310  gltA; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
RGE_29810  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
RGE_38310  acnA; aconitate hydrase 1 [KO:K01681] [EC:4.2.1.3]
RGE_12220  acnB; aconitate hydrase 2 AcnB [KO:K01682] [EC:4.2.1.3 4.2.1.99]
RGE_09950  phbA; acetyl-CoA acetyltransferase PhbA [KO:K00626] [EC:2.3.1.9]
RGE_23760  phbA; acetyl-CoA C-acetyltransferase PhbA [KO:K00626] [EC:2.3.1.9]
RGE_01440  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RGE_21080  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RGE_24070  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RGE_24390  thiolase family protein [KO:K00626] [EC:2.3.1.9]
RGE_43520  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RGE_23770  phbB; acetoacetyl-CoA reductase PhbB [KO:K00023] [EC:1.1.1.36]
RGE_12410  biotin carboxylase [KO:K01965] [EC:6.4.1.3]
RGE_12400  accA; carboxyl transferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
RGE_12380  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
RGE_02000  glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
RGE_01990  glcE; glycolate oxidase, subunit GlcE [KO:K11472] [EC:1.1.99.14]
RGE_01970  glcF; glycolate oxidase iron-sulfur subunit GlcF [KO:K11473] [EC:1.1.99.14]
RGE_45190  D-isomer specific 2-hydroxyacid dehydrogenase family protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RGE_23550  oxidoreductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
RGE_03060  gph; phosphoglycolate phosphatase Gph [KO:K01091] [EC:3.1.3.18]
RGE_35990  cbbZ; phosphoglycolate phosphatase CbbZ [KO:K01091] [EC:3.1.3.18]
RGE_40890  haloacid dehalogenase-like hydrolase [KO:K01091] [EC:3.1.3.18]
RGE_36060  cbbL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit CbbL [KO:K01601] [EC:4.1.1.39]
RGE_36050  cbbS; ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit CbbS [KO:K01602] [EC:4.1.1.39]
RGE_26250  puuA; glutamate--putrescine ligase PuuA [KO:K01915] [EC:6.3.1.2]
RGE_26330  glnA; glutamine synthetase GlnA [KO:K01915] [EC:6.3.1.2]
RGE_02450  methylserine aldolase [KO:K00600] [EC:2.1.2.1]
RGE_38960  glyA; serine hydroxymethyltransferase GlyA [KO:K00600] [EC:2.1.2.1]
RGE_15940  gcvP; glycine dehydrogenase GcvP [KO:K00281] [EC:1.4.4.2]
RGE_15960  gcvT; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
RGE_23670  lpdA; dihydrolipoamide dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
RGE_27720  odhL; 2-oxoglutarate dehydrogenase E3 component OdhL [KO:K00382] [EC:1.8.1.4]
RGE_15950  gcvH; glycine cleavage system H protein GcvH [KO:K02437]
RGE_00220  ttuD; putative hydroxypyruvate reductase TtuD [KO:K11529] [EC:2.7.1.165]
RGE_40160  yeaU; tartrate dehydrogenase YeaU [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RGE_34460  eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase Eda [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RGE_36630  fdsD; NAD-dependent formate dehydrogenase, delta subunit FdsD [KO:K00126] [EC:1.17.1.9]
RGE_11420  fdoG; formate dehydrogenase-O, major subunit, selenocysteine-containing FdoG [KO:K00123] [EC:1.17.1.9]
RGE_36640  fdsA; NAD-dependent formate dehydrogenase, alpha subunit FdsA [KO:K00123] [EC:1.17.1.9]
RGE_11410  fdoH; formate dehydrogenase-O, iron-sulfur subunit FdoH [KO:K00124]
RGE_36650  fdsB; NAD-dependent formate dehydrogenase, beta subunit FdsB [KO:K00124]
RGE_11400  fdoI; formate dehydrogenase-O, cytochrome b556 subunit FdoI [KO:K00127]
RGE_36660  fdsG; NAD-dependent formate dehydrogenase, gamma subunit FdsG [KO:K00127]
RGE_31070  hypothetical protein [KO:K01432] [EC:3.5.1.9]
RGE_13230  putative cyclase [KO:K07130] [EC:3.5.1.9]
RGE_01580  purU; formyltetrahydrofolate deformylase PurU [KO:K01433] [EC:3.5.1.10]
RGE_20560  fmdA; formamidase FmdA [KO:K01455] [EC:3.5.1.49]
RGE_38140  hutG; N-formylglutamate deformylase HutG [KO:K01458] [EC:3.5.1.68]
RGE_16610  AMP-dependent synthetase and ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rge00010  Glycolysis / Gluconeogenesis
rge00020  Citrate cycle (TCA cycle)
rge00030  Pentose phosphate pathway
rge00053  Ascorbate and aldarate metabolism
rge00071  Fatty acid degradation
rge00230  Purine metabolism
rge00250  Alanine, aspartate and glutamate metabolism
rge00260  Glycine, serine and threonine metabolism
rge00620  Pyruvate metabolism
rge00710  Carbon fixation by Calvin cycle
rge00750  Vitamin B6 metabolism
rge00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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