KEGG   PATHWAY: rhx00020
Entry
rhx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rhizobium sp. N731
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rhx00020  Citrate cycle (TCA cycle)
rhx00020

Module
rhx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rhx00020]
rhx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rhx00020]
rhx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rhx00020]
rhx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rhx00020]
Other DBs
GO: 0006099
Organism
Rhizobium sp. N731 [GN:rhx]
Gene
AMK02_CH01996  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AMK02_CH02251  citrate synthase protein [KO:K01647] [EC:2.3.3.1]
AMK02_CH02252  citA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AMK02_CH04068  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AMK02_CH02390  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
AMK02_CH04015  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AMK02_CH04013  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AMK02_CH04008  dihydrolipoamide dehydrogenase protein [KO:K00382] [EC:1.8.1.4]
AMK02_CH02009  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AMK02_PB00090  lpdV; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AMK02_CH04016  sucD; succinyl-CoA synthetase (ADP-forming) subunit alpha [KO:K01902] [EC:6.2.1.5]
AMK02_CH04017  sucC; succinyl-CoA synthetase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
AMK02_CH04022  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AMK02_CH04021  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AMK02_CH04024  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
AMK02_CH04023  sdhD; succinate dehydrogenase SdhD subunit [KO:K00242]
AMK02_CH02453  fumA; fumarate hydratase class 1 [KO:K01676] [EC:4.2.1.2]
AMK02_CH02451  fumC; fumarate hydratase class 2 [KO:K01679] [EC:4.2.1.2]
AMK02_CH04018  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AMK02_CH04127  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AMK02_CH00037  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AMK02_CH02004  pdhA; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
AMK02_CH02005  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
AMK02_CH02006  pdhC; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rhx00010  Glycolysis / Gluconeogenesis
rhx00053  Ascorbate and aldarate metabolism
rhx00061  Fatty acid biosynthesis
rhx00071  Fatty acid degradation
rhx00190  Oxidative phosphorylation
rhx00220  Arginine biosynthesis
rhx00250  Alanine, aspartate and glutamate metabolism
rhx00280  Valine, leucine and isoleucine degradation
rhx00350  Tyrosine metabolism
rhx00470  D-Amino acid metabolism
rhx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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