KEGG   PATHWAY: rle00630
Entry
rle00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhizobium johnstonii
Class
Metabolism; Carbohydrate metabolism
Pathway map
rle00630  Glyoxylate and dicarboxylate metabolism
rle00630

Module
rle_M00012  Glyoxylate cycle [PATH:rle00630]
rle_M00621  Glycine cleavage system [PATH:rle00630]
rle_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rle00630]
Other DBs
GO: 0046487 0043648
Organism
Rhizobium johnstonii [GN:rle]
Gene
RL0761  aceA; putative isocitrate lyase [KO:K01637] [EC:4.1.3.1]
RL4727  acs; putative acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
pRL80044  acsA2; putative acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
pRL100121  acsA3; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
RL4301  acsA4; putative acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
RL0054  glcB; Malate synthase G (EC 2.3.3.9) (MSG). [KO:K01638] [EC:2.3.3.9]
RL4439  mdh; putative malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RL2234  ccsA; putative citrate synthase [KO:K01647] [EC:2.3.3.1]
RL2509  citZ; putative citrate synthase I [KO:K01647] [EC:2.3.3.1]
RL2508  gltA2; putative citrate synthase II [KO:K01647] [EC:2.3.3.1]
RL4536  acnA; putative aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RL4621  phaA; putative acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
pRL120369  putative thiolase [KO:K00626] [EC:2.3.1.9]
pRL100301  putative acyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
RL0592  probable beta-ketoadipyl coa thiolase (ec 2.3.1.-) [KO:K00626] [EC:2.3.1.9]
RL4620  phaB; putative acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
RL1717  putative lactoylglutathione lyase [KO:K05606] [EC:5.1.99.1]
RL2558  pccA; putative propionyl-CoA carboxylase alpha subunit [KO:K01965] [EC:6.4.1.3]
RL2563  pccB; putative propionyl-CoA carboxylase protein [KO:K01966] [EC:6.4.1.3 2.1.3.15]
pRL90299  putative methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
RL0864  glcD; putative glycolate oxidase subunit [KO:K00104] [EC:1.1.99.14]
RL0865  glcE; putative glycolate oxidase subunit [KO:K11472] [EC:1.1.99.14]
RL0866  glcF; putative glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
RL2024  katE; putative catalase [KO:K03781] [EC:1.11.1.6]
RL0145  gyaR1; putative glyoxylate reductase [KO:K00015] [EC:1.1.1.26]
pRL120632  putative dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RL0189  putative 2-hydroxyacid dehydrogenase [KO:K12972] [EC:1.1.1.79 1.1.1.81]
RL2699  putative phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RL2566  putative hydrolase protein [KO:K01091] [EC:3.1.3.18]
RL0903  gph; putative phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RL1466  putative glutamine synthetase like protein [KO:K01915] [EC:6.3.1.2]
RL2392  glnA; putative glutamine synthetase I [KO:K01915] [EC:6.3.1.2]
RL3549  glnII; putative glutamine synthetase II [KO:K01915] [EC:6.3.1.2]
RL3346  putative glutamine synthetase like protein [KO:K01915] [EC:6.3.1.2]
pRL110554  glnT; glutamine synthetase III [KO:K01915] [EC:6.3.1.2]
RL0755  putative glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RL1620  glyA; putative serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RL2573  gcvP; putative glycine dehydrogenase [decarboxylating] [KO:K00281] [EC:1.4.4.2]
RL2572  gcvT; putative aminomethyltransferase (glycine cleavage system t protein) [KO:K00605] [EC:2.1.2.10]
pRL110541  putative glycine degradation aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
pRL110552  putative aminomethyltransferase/glycine cleavage protein [KO:K00605] [EC:2.1.2.10]
RL2246  putative dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RL4429  lpdA; putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
pRL100306  lpdV; putative dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RL3792  putative hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
RL3799  putative hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
RL3800  putative oxidoreductase [KO:K00042] [EC:1.1.1.60]
RL3773  putative 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
RL2772  putative dehydrogenase/reductase [KO:K00042] [EC:1.1.1.60]
pRL100393  putative NAD-binding protein [KO:K00042] [EC:1.1.1.60]
RL2008  conserved hypothetical protein [KO:K11529] [EC:2.7.1.165]
RL0994  putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
pRL120629  putative tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RL0995  putative tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
pRL110153  ttuC; putative tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RL4162  eda; putative 2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
RL4389  conserved hypothetical protein [KO:K00126] [EC:1.17.1.9]
RL4391  fdsA; putative NAD-dependent formate dehydrogenase alpha subunit [KO:K00123] [EC:1.17.1.9]
RL4392  fdsB; putative NAD-dependent formate dehydrogenase beta subunit [KO:K00124]
RL4393  fdsG; putative NAD-dependent formate dehydrogenase gamma subunit [KO:K00127]
pRL110553  purU; putative formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RL0233  purU; putative formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
pRL100351  amiF; putative formamidase [KO:K01455] [EC:3.5.1.49]
pRL110204  putative formiminoglutamase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rle00010  Glycolysis / Gluconeogenesis
rle00020  Citrate cycle (TCA cycle)
rle00030  Pentose phosphate pathway
rle00053  Ascorbate and aldarate metabolism
rle00071  Fatty acid degradation
rle00230  Purine metabolism
rle00250  Alanine, aspartate and glutamate metabolism
rle00260  Glycine, serine and threonine metabolism
rle00620  Pyruvate metabolism
rle00710  Carbon fixation by Calvin cycle
rle00750  Vitamin B6 metabolism
rle00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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