KEGG   PATHWAY: roi00020
Entry
roi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Roseateles amylovorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
roi00020  Citrate cycle (TCA cycle)
roi00020

Module
roi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:roi00020]
roi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:roi00020]
roi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:roi00020]
roi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:roi00020]
roi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:roi00020]
Other DBs
GO: 0006099
Organism
Roseateles amylovorans [GN:roi]
Gene
N4261_10110  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
N4261_15870  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
N4261_16835  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
N4261_10040  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
N4261_09320  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
N4261_18950  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
N4261_18985  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
N4261_18945  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
N4261_18940  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N4261_19960  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
N4261_25130  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
N4261_25135  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
N4261_10095  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
N4261_10100  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
N4261_10085  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
N4261_10090  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
N4261_09650  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
N4261_04865  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
N4261_10075  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
N4261_01285  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
N4261_19970  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
N4261_19965  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
roi00010  Glycolysis / Gluconeogenesis
roi00053  Ascorbate and aldarate metabolism
roi00061  Fatty acid biosynthesis
roi00071  Fatty acid degradation
roi00190  Oxidative phosphorylation
roi00220  Arginine biosynthesis
roi00250  Alanine, aspartate and glutamate metabolism
roi00280  Valine, leucine and isoleucine degradation
roi00350  Tyrosine metabolism
roi00470  D-Amino acid metabolism
roi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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