KEGG   PATHWAY: rox00020
Entry
rox00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rahnella sikkimica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rox00020  Citrate cycle (TCA cycle)
rox00020

Module
rox_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rox00020]
rox_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rox00020]
rox_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rox00020]
rox_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rox00020]
rox_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rox00020]
Other DBs
GO: 0006099
Organism
Rahnella sikkimica [GN:rox]
Gene
BV494_10875  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BV494_03820  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BV494_13295  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BV494_09535  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BV494_10850  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BV494_10845  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BV494_13300  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BV494_10835  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BV494_10840  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BV494_10860  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BV494_10855  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BV494_10870  succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
BV494_10865  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BV494_14680  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
BV494_14685  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
BV494_14690  fumarate reductase subunit C [KO:K00246]
BV494_14695  fumarate reductase subunit D [KO:K00247]
BV494_22200  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BV494_06005  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BV494_14425  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BV494_16090  malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
BV494_16095  malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
BV494_15425  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BV494_13310  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BV494_13305  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BV494_05125  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rox00010  Glycolysis / Gluconeogenesis
rox00053  Ascorbate and aldarate metabolism
rox00061  Fatty acid biosynthesis
rox00071  Fatty acid degradation
rox00190  Oxidative phosphorylation
rox00220  Arginine biosynthesis
rox00250  Alanine, aspartate and glutamate metabolism
rox00280  Valine, leucine and isoleucine degradation
rox00350  Tyrosine metabolism
rox00470  D-Amino acid metabolism
rox00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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