KEGG   PATHWAY: rpd00630
Entry
rpd00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Rhodopseudomonas palustris BisB5
Class
Metabolism; Carbohydrate metabolism
Pathway map
rpd00630  Glyoxylate and dicarboxylate metabolism
rpd00630

Module
rpd_M00012  Glyoxylate cycle [PATH:rpd00630]
rpd_M00621  Glycine cleavage system [PATH:rpd00630]
rpd_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:rpd00630]
Other DBs
GO: 0046487 0043648
Organism
Rhodopseudomonas palustris BisB5 [GN:rpd]
Gene
RPD_4053  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
RPD_3298  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
RPD_0474  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
RPD_3103  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
RPD_3984  AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]
RPD_1375  Malate synthase G [KO:K01638] [EC:2.3.3.9]
RPD_0535  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
RPD_2843  citrate synthase [KO:K01647] [EC:2.3.3.1]
RPD_0525  aconitase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
RPD_3105  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RPD_3115  conserved hypothetical protein [KO:K00626] [EC:2.3.1.9]
RPD_3306  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
RPD_3318  Thiolase [KO:K00626] [EC:2.3.1.9]
RPD_3611  Acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
RPD_3991  Acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
RPD_1858  putative acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RPD_0805  Acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
RPD_0306  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
RPD_3551  Acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
RPD_0305  3-oxoacyl-[acyl-carrier-protein] reductase [KO:K00023] [EC:1.1.1.36]
RPD_2869  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
RPD_3093  Carbamoyl-phosphate synthase L chain, ATP-binding [KO:K01965] [EC:6.4.1.3]
RPD_3122  carboxyl transferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
RPD_1927  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
RPD_1929  Methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
RPD_4137  D-lactate dehydrogenase (cytochrome) [KO:K00104] [EC:1.1.99.14]
RPD_4136  FAD linked oxidase-like [KO:K11472] [EC:1.1.99.14]
RPD_4135  protein of unknown function DUF224, cysteine-rich region [KO:K11473] [EC:1.1.99.14]
RPD_0617  Catalase [KO:K03781] [EC:1.11.1.6]
RPD_0217  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding [KO:K00015] [EC:1.1.1.26]
RPD_2054  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
RPD_1549  ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
RPD_3722  ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
RPD_1054  ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
RPD_0462  ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
RPD_1548  ribulose 1,5-bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
RPD_3721  ribulose 1,5-bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
RPD_0780  Serine--glyoxylate transaminase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
RPD_2901  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RPD_1385  L-glutamine synthetase [KO:K01915] [EC:6.3.1.2]
RPD_2305  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RPD_2671  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
RPD_1731  glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit [KO:K00281] [EC:1.4.4.2]
RPD_1733  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
RPD_2807  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RPD_0550  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
RPD_1732  glycine cleavage system H protein [KO:K02437]
RPD_1897  Hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
RPD_1841  Tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
RPD_0621  formate dehydrogenase delta subunit [KO:K00126] [EC:1.17.1.9]
RPD_0623  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
RPD_0624  NADH dehydrogenase (quinone) [KO:K00124]
RPD_0625  NADH dehydrogenase (ubiquinone), 24 kDa subunit [KO:K00127]
RPD_1583  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
RPD_3859  Formamidase [KO:K01455] [EC:3.5.1.49]
RPD_2027  L-carnitine dehydratase/bile acid-inducible protein F [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
rpd00010  Glycolysis / Gluconeogenesis
rpd00020  Citrate cycle (TCA cycle)
rpd00030  Pentose phosphate pathway
rpd00053  Ascorbate and aldarate metabolism
rpd00071  Fatty acid degradation
rpd00230  Purine metabolism
rpd00250  Alanine, aspartate and glutamate metabolism
rpd00260  Glycine, serine and threonine metabolism
rpd00620  Pyruvate metabolism
rpd00710  Carbon fixation by Calvin cycle
rpd00750  Vitamin B6 metabolism
rpd00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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