KEGG   PATHWAY: rsz00240
Entry
rsz00240                    Pathway                                
Name
Pyrimidine metabolism - Raphanus sativus (radish)
Class
Metabolism; Nucleotide metabolism
Pathway map
rsz00240  Pyrimidine metabolism
rsz00240

Module
rsz_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:rsz00240]
rsz_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:rsz00240]
rsz_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rsz00240]
rsz_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:rsz00240]
Other DBs
GO: 0006220 0006213
Organism
Raphanus sativus (radish) [GN:rsz]
Gene
108807687  carbamoyl-phosphate synthase large chain, chloroplastic [KO:K01955] [EC:6.3.5.5]
108820087  carbamoyl-phosphate synthase small chain, chloroplastic [KO:K01956] [EC:6.3.5.5]
108823651  carbamoyl-phosphate synthase small chain, chloroplastic isoform X1 [KO:K01956] [EC:6.3.5.5]
108823663  carbamoyl-phosphate synthase small chain, chloroplastic-like isoform X1 [KO:K01956] [EC:6.3.5.5]
108861418  aspartate carbamoyltransferase, chloroplastic [KO:K00609] [EC:2.1.3.2]
108849410  dihydroorotase, mitochondrial-like [KO:K01465] [EC:3.5.2.3]
108816399  dihydroorotase, mitochondrial [KO:K01465] [EC:3.5.2.3]
108849423  dihydroorotase, mitochondrial [KO:K01465] [EC:3.5.2.3]
130511717  dihydroorotase, mitochondrial-like [KO:K01465] [EC:3.5.2.3]
108825259  dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
108827957  dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
108854947  dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
108860308  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
108848270  uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
130510705  uridine 5'-monophosphate synthase-like [KO:K13421] [EC:2.4.2.10 4.1.1.23]
108825507  UMP-CMP kinase 3 [KO:K13800] [EC:2.7.4.14]
108840135  probable UMP-CMP kinase 2 isoform X2 [KO:K13800] [EC:2.7.4.14]
108861926  probable UMP-CMP kinase 1 isoform X1 [KO:K13800] [EC:2.7.4.14]
108849057  UMP-CMP kinase 3 isoform X1 [KO:K13800] [EC:2.7.4.14]
108856387  uridylate kinase PUMPKIN, chloroplastic [KO:K09903] [EC:2.7.4.22]
108857641  uridylate kinase PUMPKIN, chloroplastic [KO:K09903] [EC:2.7.4.22]
130503906  uridylate kinase PUMPKIN, chloroplastic-like [KO:K09903] [EC:2.7.4.22]
108857195  nucleoside diphosphate kinase II, chloroplastic [KO:K00940] [EC:2.7.4.6]
108829845  nucleoside diphosphate kinase III, chloroplastic/mitochondrial [KO:K00940] [EC:2.7.4.6]
108841820  nucleoside diphosphate kinase IV, chloroplastic/mitochondrial [KO:K00940] [EC:2.7.4.6]
108822237  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
108826299  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
130494961  uncharacterized protein LOC130494961 [KO:K00940] [EC:2.7.4.6]
108831535  LOW QUALITY PROTEIN: nucleoside diphosphate kinase III, chloroplastic/mitochondrial [KO:K00940] [EC:2.7.4.6]
108809982  probable apyrase 5 [KO:K01510] [EC:3.6.1.5]
108852144  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
108843009  probable apyrase 4 isoform X1 [KO:K01510] [EC:3.6.1.5]
108843219  probable apyrase 5 [KO:K01510] [EC:3.6.1.5]
108812996  apyrase 1 [KO:K14641] [EC:3.6.1.5]
108814863  apyrase 2 [KO:K14641] [EC:3.6.1.5]
108843931  apyrase 2 [KO:K14641] [EC:3.6.1.5]
108856226  apyrase 1 [KO:K14641] [EC:3.6.1.5]
130496893  apyrase 1-like [KO:K14641] [EC:3.6.1.5]
130509371  apyrase 2 [KO:K14641] [EC:3.6.1.5]
108843722  uncharacterized protein LOC108843722 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
108829966  uncharacterized protein LOC108829966 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
108851682  nudix hydrolase 25 [KO:K26955] [EC:3.6.1.17]
108818636  nudix hydrolase 25-like [KO:K26955] [EC:3.6.1.17]
108828937  nudix hydrolase 25-like [KO:K26955] [EC:3.6.1.17]
108859629  nudix hydrolase 25 [KO:K26955] [EC:3.6.1.17]
108835024  uncharacterized protein LOC108835024 [KO:K01937] [EC:6.3.4.2]
108839685  uncharacterized protein LOC108839685 [KO:K01937] [EC:6.3.4.2]
108862179  uncharacterized protein LOC108862179 [KO:K01937] [EC:6.3.4.2]
108816789  uncharacterized protein LOC108816789 [KO:K01937] [EC:6.3.4.2]
108859461  uncharacterized protein LOC108859461 [KO:K01937] [EC:6.3.4.2]
108814559  uncharacterized protein LOC108814559 [KO:K01937] [EC:6.3.4.2]
108807261  uncharacterized protein LOC108807261 isoform X1 [KO:K01937] [EC:6.3.4.2]
108812600  uncharacterized protein LOC108812600 [KO:K01937] [EC:6.3.4.2]
108848243  uncharacterized protein LOC108848243 [KO:K01937] [EC:6.3.4.2]
130501446  uncharacterized protein LOC130501446 [KO:K01937] [EC:6.3.4.2]
130501972  uncharacterized protein LOC130501972 [KO:K01937] [EC:6.3.4.2]
130503543  uncharacterized protein LOC130503543 [KO:K01937] [EC:6.3.4.2]
108822292  uridine kinase-like protein 3 [KO:K00876] [EC:2.7.1.48]
108823904  uridine kinase-like protein 4 [KO:K00876] [EC:2.7.1.48]
108834878  uridine/cytidine kinase UKL1, chloroplastic [KO:K00876] [EC:2.7.1.48]
108848706  uridine/cytidine kinase UKL1, chloroplastic [KO:K00876] [EC:2.7.1.48]
108818873  inorganic pyrophosphatase TTM2 isoform X2 [KO:K00876] [EC:2.7.1.48]
108826174  inorganic pyrophosphatase TTM1 [KO:K00876] [EC:2.7.1.48]
108839752  inorganic pyrophosphatase TTM2 isoform X1 [KO:K00876] [EC:2.7.1.48]
108842857  uridine kinase-like protein 4 [KO:K00876] [EC:2.7.1.48]
108826262  uridine kinase-like protein 5 [KO:K00876] [EC:2.7.1.48]
108842525  inorganic pyrophosphatase TTM1 isoform X1 [KO:K00876] [EC:2.7.1.48]
108834767  uridine/cytidine kinase UKL1, chloroplastic [KO:K00876] [EC:2.7.1.48]
108833352  uridine/cytidine kinase UKL1, chloroplastic [KO:K00876] [EC:2.7.1.48]
130499132  inorganic pyrophosphatase TTM2 isoform X1 [KO:K00876] [EC:2.7.1.48]
130494270  uridine kinase-like protein 3 [KO:K00876] [EC:2.7.1.48]
108824561  uncharacterized protein LOC108824561 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
108823965  uncharacterized protein LOC108823965 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
108817432  uncharacterized protein LOC108817432 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
108843101  uncharacterized protein LOC108843101 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
108822888  uncharacterized protein LOC108822888 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
130498877  uncharacterized protein LOC130498877 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
108839386  uncharacterized protein LOC108839386 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
108806770  uridine nucleosidase 1 isoform X1 [KO:K01240] [EC:3.2.2.3]
108847908  uridine nucleosidase 1 [KO:K01240] [EC:3.2.2.3]
108847909  uridine nucleosidase 1-like [KO:K01240] [EC:3.2.2.3]
108862248  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
108819464  probable uridine nucleosidase 2 [KO:K01240] [EC:3.2.2.3]
108859278  uracil phosphoribosyltransferase, chloroplastic isoform X1 [KO:K00761] [EC:2.4.2.9]
108829734  uracil phosphoribosyltransferase, chloroplastic [KO:K00761] [EC:2.4.2.9]
108857565  pseudouridine-5'-phosphate glycosidase [KO:K16329] [EC:4.2.1.70]
108851155  pseudouridine-5'-phosphate glycosidase isoform X1 [KO:K16329] [EC:4.2.1.70]
108843919  uncharacterized protein LOC108843919 [KO:K24242] [EC:3.1.3.91]
130504593  uncharacterized protein LOC130504593 [KO:K24242] [EC:3.1.3.91]
130507146  uncharacterized protein LOC130507146 [KO:K24242] [EC:3.1.3.91]
108831499  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
108855408  cytidine deaminase 1 [KO:K01489] [EC:3.5.4.5]
130502412  cytidine deaminase 1-like [KO:K01489] [EC:3.5.4.5]
130511832  cytidine deaminase 1-like [KO:K01489] [EC:3.5.4.5]
108822723  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
108805986  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
130506840  ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
108807953  ribonucleoside-diphosphate reductase small chain C-like [KO:K10808] [EC:1.17.4.1]
108834910  ribonucleoside-diphosphate reductase small chain C [KO:K10808] [EC:1.17.4.1]
108857495  ribonucleoside-diphosphate reductase small chain A [KO:K10808] [EC:1.17.4.1]
108862644  LOW QUALITY PROTEIN: uncharacterized protein LOC108862644 [KO:K16904] [EC:3.6.1.12]
108819422  uncharacterized protein LOC108819422 [KO:K07023] [EC:3.1.3.89]
108852023  uncharacterized protein LOC108852023 [KO:K07023] [EC:3.1.3.89]
108809058  uncharacterized protein LOC108809058 [KO:K07023] [EC:3.1.3.89]
130498564  uncharacterized protein LOC130498564 isoform X1 [KO:K07023] [EC:3.1.3.89]
108817808  uncharacterized protein LOC108817808 [KO:K01493] [EC:3.5.4.12]
108824073  thymidylate kinase isoform X1 [KO:K00943] [EC:2.7.4.9]
108813592  deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
108859315  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
108828166  thymidine kinase b [KO:K00857] [EC:2.7.1.21]
108836754  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
108811359  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
108855012  thymidine kinase b [KO:K00857] [EC:2.7.1.21]
130497066  thymidine kinase a [KO:K00857] [EC:2.7.1.21]
108842569  bifunctional dihydrofolate reductase-thymidylate synthase 2 isoform X1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
108861958  bifunctional dihydrofolate reductase-thymidylate synthase 1 [KO:K13998] [EC:1.5.1.3 2.1.1.45]
130509264  bifunctional dihydrofolate reductase-thymidylate synthase 1-like [KO:K13998] [EC:1.5.1.3 2.1.1.45]
108836084  bifunctional dihydrofolate reductase-thymidylate synthase 1-like [KO:K13998] [EC:1.5.1.3 2.1.1.45]
130494369  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic-like [KO:K00207] [EC:1.3.1.2]
108812448  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
108835351  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
108856752  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic [KO:K00207] [EC:1.3.1.2]
108858907  dihydropyrimidine dehydrogenase (NADP(+)), chloroplastic-like [KO:K00207] [EC:1.3.1.2]
108817598  dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
108823433  beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
108862891  beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
rsz00030  Pentose phosphate pathway
rsz00220  Arginine biosynthesis
rsz00250  Alanine, aspartate and glutamate metabolism
rsz00280  Valine, leucine and isoleucine degradation
rsz00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

DBGET integrated database retrieval system