KEGG   PATHWAY: rtn00020
Entry
rtn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Rathayibacter tritici
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rtn00020  Citrate cycle (TCA cycle)
rtn00020

Module
rtn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rtn00020]
rtn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rtn00020]
rtn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rtn00020]
Other DBs
GO: 0006099
Organism
Rathayibacter tritici [GN:rtn]
Gene
A6122_1774  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A6122_1423  citrate synthase/methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
A6122_1359  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
A6122_0691  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A6122_1876  alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
A6122_0163  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A6122_1376  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A6122_0670  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A6122_0669  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A6122_1970  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A6122_1971  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A6122_1968  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A6122_1969  succinate dehydrogenase [KO:K00242]
A6122_1826  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
A6122_2499  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A6122_2161  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A6122_1987  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
A6122_1544  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rtn00010  Glycolysis / Gluconeogenesis
rtn00053  Ascorbate and aldarate metabolism
rtn00061  Fatty acid biosynthesis
rtn00071  Fatty acid degradation
rtn00190  Oxidative phosphorylation
rtn00220  Arginine biosynthesis
rtn00250  Alanine, aspartate and glutamate metabolism
rtn00280  Valine, leucine and isoleucine degradation
rtn00350  Tyrosine metabolism
rtn00470  D-Amino acid metabolism
rtn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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