KEGG   PATHWAY: saga00020
Entry
saga00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Simiduia agarivorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
saga00020  Citrate cycle (TCA cycle)
saga00020

Module
saga_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:saga00020]
saga_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:saga00020]
saga_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:saga00020]
saga_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:saga00020]
Other DBs
GO: 0006099
Organism
Simiduia agarivorans [GN:saga]
Gene
M5M_00215  citrate synthase [KO:K01647] [EC:2.3.3.1]
M5M_00445  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
M5M_03030  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M5M_03140  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M5M_00190  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
M5M_00185  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
M5M_00180  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
M5M_00170  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
M5M_00175  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
M5M_00200  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M5M_00195  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M5M_00210  Succinate dehydrogenase cytochrome b subunit [KO:K00241]
M5M_00205  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
M5M_08180  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
M5M_03600  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M5M_13255  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
M5M_05837  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
M5M_05835  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
saga00010  Glycolysis / Gluconeogenesis
saga00053  Ascorbate and aldarate metabolism
saga00061  Fatty acid biosynthesis
saga00071  Fatty acid degradation
saga00190  Oxidative phosphorylation
saga00220  Arginine biosynthesis
saga00250  Alanine, aspartate and glutamate metabolism
saga00280  Valine, leucine and isoleucine degradation
saga00350  Tyrosine metabolism
saga00470  D-Amino acid metabolism
saga00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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