KEGG   PATHWAY: seen00020
Entry
seen00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
seen00020  Citrate cycle (TCA cycle)
seen00020

Module
seen_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:seen00020]
seen_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:seen00020]
seen_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:seen00020]
seen_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:seen00020]
seen_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:seen00020]
Other DBs
GO: 0006099
Organism
Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736 [GN:seen]
Gene
SE451236_09675  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
SE451236_14495  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SE451236_06810  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SE451236_12055  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SE451236_09700  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
SE451236_09705  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SE451236_06790  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SE451236_09715  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
SE451236_09710  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
SE451236_09690  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SE451236_09695  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SE451236_09680  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
SE451236_09685  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
SE451236_04750  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
SE451236_04745  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
SE451236_04740  fumarate reductase subunit C [KO:K00246]
SE451236_04735  fumarate reductase subunit D [KO:K00247]
SE451236_04545  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
SE451236_13205  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
SE451236_09840  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
SE451236_09835  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
SE451236_13210  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SE451236_12805  hypothetical protein [KO:K01675] [EC:4.2.1.2]
SE451236_22910  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SE451236_03405  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SE451236_06780  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
SE451236_06785  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
SE451236_14170  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
seen00010  Glycolysis / Gluconeogenesis
seen00053  Ascorbate and aldarate metabolism
seen00061  Fatty acid biosynthesis
seen00071  Fatty acid degradation
seen00190  Oxidative phosphorylation
seen00220  Arginine biosynthesis
seen00250  Alanine, aspartate and glutamate metabolism
seen00280  Valine, leucine and isoleucine degradation
seen00350  Tyrosine metabolism
seen00470  D-Amino acid metabolism
seen00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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