KEGG   PATHWAY: ser00020
Entry
ser00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus epidermidis RP62A (MRSE)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ser00020  Citrate cycle (TCA cycle)
ser00020

Module
ser_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ser00020]
ser_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ser00020]
ser_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ser00020]
ser_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ser00020]
ser_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ser00020]
Other DBs
GO: 0006099
Organism
Staphylococcus epidermidis RP62A (MRSE) [GN:ser]
Gene
SERP1258  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
SERP0921  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SERP1257  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
SERP0986  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
SERP0985  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydroipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SERP2327  acetoin dehydrogenase, E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SERP0683  pdhD; pyruvate dehydrogenase complex E3 component, lipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SERP1079  lpdA; 2-oxoisovalerate dehydrogenase, E3 component, lipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SERP0856  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SERP0857  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SERP0814  sucD; succinyl-CoA synthase, alpha subunit [KO:K01902] [EC:6.2.1.5]
SERP0813  sucC; succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
SERP0731  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SERP0732  succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
SERP0730  sdhC; succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
SERP1387  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
SERP0347  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SERP2168  mqo-2; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SERP2312  mqo-3; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SERP2412  mqo-4; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SERP1955  mqo-1; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
SERP0704  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SERP1353  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
SERP0680  pdhA; pyruvate dehydrogenase complex E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
SERP0681  pdhB; pyruvate dehydrogenase complex E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
SERP2324  acetoin dehydrogenase, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
SERP0682  pdhC; pyruvate dehydrogenase complex E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ser00010  Glycolysis / Gluconeogenesis
ser00061  Fatty acid biosynthesis
ser00071  Fatty acid degradation
ser00190  Oxidative phosphorylation
ser00220  Arginine biosynthesis
ser00250  Alanine, aspartate and glutamate metabolism
ser00280  Valine, leucine and isoleucine degradation
ser00350  Tyrosine metabolism
ser00470  D-Amino acid metabolism
ser00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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