KEGG   PATHWAY: seur00020
Entry
seur00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Shewanella eurypsychrophilus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
seur00020  Citrate cycle (TCA cycle)
seur00020

Module
seur_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:seur00020]
seur_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:seur00020]
seur_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:seur00020]
seur_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:seur00020]
seur_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:seur00020]
Other DBs
GO: 0006099
Organism
Shewanella eurypsychrophilus [GN:seur]
Gene
FM038_009160  citrate synthase [KO:K01647] [EC:2.3.3.1]
FM038_001995  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FM038_013890  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FM038_018145  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
FM038_009185  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FM038_009190  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FM038_001965  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FM038_009200  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FM038_009195  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FM038_009175  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FM038_009180  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FM038_009165  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
FM038_009170  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
FM038_002580  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
FM038_002585  fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
FM038_002570  fumarate reductase cytochrome b subunit [KO:K25996]
FM038_002575  fumarate reductase cytochrome b subunit [KO:K25996]
FM038_004020  flavocytochrome c [KO:K26318] [EC:1.3.2.4]
FM038_012820  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FM038_021805  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FM038_004780  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FM038_024305  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
FM038_001955  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FM038_001960  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
FM038_011335  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
seur00010  Glycolysis / Gluconeogenesis
seur00053  Ascorbate and aldarate metabolism
seur00061  Fatty acid biosynthesis
seur00071  Fatty acid degradation
seur00190  Oxidative phosphorylation
seur00220  Arginine biosynthesis
seur00250  Alanine, aspartate and glutamate metabolism
seur00280  Valine, leucine and isoleucine degradation
seur00350  Tyrosine metabolism
seur00470  D-Amino acid metabolism
seur00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system