KEGG   PATHWAY: sfeu00020
Entry
sfeu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces ferrugineus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sfeu00020  Citrate cycle (TCA cycle)
sfeu00020

Module
sfeu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sfeu00020]
sfeu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sfeu00020]
sfeu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sfeu00020]
sfeu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sfeu00020]
sfeu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sfeu00020]
Other DBs
GO: 0006099
Organism
Streptomyces ferrugineus [GN:sfeu]
Gene
IM697_04025  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
IM697_07440  citrate synthase [KO:K01647] [EC:2.3.3.1]
IM697_33965  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
IM697_33970  citrate synthase [KO:K01647] [EC:2.3.3.1]
IM697_22055  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
IM697_33265  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
IM697_27480  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IM697_37090  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
IM697_10955  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IM697_18820  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IM697_41040  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
IM697_41045  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
IM697_29655  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IM697_40045  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IM697_29660  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IM697_40050  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IM697_19345  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IM697_38375  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IM697_39600  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IM697_19350  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IM697_38380  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IM697_39605  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IM697_19340  succinate dehydrogenase [KO:K00241]
IM697_39590  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
IM697_39595  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
IM697_38585  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
IM697_38590  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IM697_39915  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IM697_26945  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
IM697_38960  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
IM697_09695  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
IM697_10940  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
IM697_10950  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
IM697_26475  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
IM697_26480  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
IM697_26470  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sfeu00010  Glycolysis / Gluconeogenesis
sfeu00053  Ascorbate and aldarate metabolism
sfeu00061  Fatty acid biosynthesis
sfeu00071  Fatty acid degradation
sfeu00190  Oxidative phosphorylation
sfeu00220  Arginine biosynthesis
sfeu00250  Alanine, aspartate and glutamate metabolism
sfeu00280  Valine, leucine and isoleucine degradation
sfeu00350  Tyrosine metabolism
sfeu00470  D-Amino acid metabolism
sfeu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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