KEGG   PATHWAY: sfl00240
Entry
sfl00240                    Pathway                                
Name
Pyrimidine metabolism - Shigella flexneri 301 (serotype 2a)
Class
Metabolism; Nucleotide metabolism
Pathway map
sfl00240  Pyrimidine metabolism
sfl00240

Module
sfl_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:sfl00240]
sfl_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sfl00240]
sfl_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sfl00240]
sfl_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:sfl00240]
sfl_M00939  Pyrimidine degradation, uracil => 3-hydroxypropanoate [PATH:sfl00240]
Other DBs
GO: 0006220 0006213
Organism
Shigella flexneri 301 (serotype 2a) [GN:sfl]
Gene
SF0030  carB; carbamoyl phosphate synthase large subunit [KO:K01955] [EC:6.3.5.5]
SF0029  carA; carbamoyl phosphate synthase small subunit [KO:K01956] [EC:6.3.5.5]
SF4245  pyrB; aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
SF4246  pyrI; aspartate carbamoyltransferase [KO:K00610]
SF1068  pyrC; dihydroorotase [KO:K01465] [EC:3.5.2.3]
SF0946  pyrD; dihydroorotate dehydrogenase 2 [KO:K00254] [EC:1.3.5.2]
SF3681  pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
SF1285  pyrF; orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
SF0161  pyrH; uridylate kinase [KO:K09903] [EC:2.7.4.22]
SF2564  ndk; mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase [KO:K00940] [EC:2.7.4.6]
SF2796  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
SF3286  maf; Maf-like protein [KO:K06287] [EC:3.6.1.-]
SF3125  ygjP; hypothetical protein [KO:K07043] [EC:3.6.1.-]
SF2795  pyrG; CTP synthetase [KO:K01937] [EC:6.3.4.2]
SF0906  cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.25]
SF1466  pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase [KO:K08320] [EC:3.6.1.65]
SF2130  udk; uridine/cytidine kinase [KO:K00876] [EC:2.7.1.48]
CP0185  ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
SF0425  ushA; bifunctional UDP-sugar hydrolase/5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
SF2767  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
SF4405  yjjG; dUMP phosphatase [KO:K08723] [EC:3.1.3.-]
SF3909  udp; uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
SF0327  yaiE; hypothetical protein [KO:K09913] [EC:2.4.2.1 2.4.2.2]
SF2542  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
SF4273  cpdB; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
SF2251  yeiC; pseudouridine kinase [KO:K16328] [EC:2.7.1.83]
SF2250  yeiN; hypothetical protein [KO:K16329] [EC:4.2.1.70]
SF2247  rihB; ribonucleoside hydrolase 2 [KO:K10213] [EC:3.2.2.8]
SF0630  rihA; ribonucleoside hydrolase 1 [KO:K01250] [EC:3.2.2.-]
SF0027  yaaF; ribonucleoside hydrolase RihC [KO:K12700] [EC:3.2.2.-]
SF2808  ygdH; hypothetical protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
SF2228  cdd; cytidine deaminase [KO:K01489] [EC:3.5.4.5]
SF4252  nrdD; anaerobic ribonucleoside triphosphate reductase [KO:K21636] [EC:1.1.98.6]
SF2129  dcd; deoxycytidine triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
SF2316  nrdA; ribonucleotide-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
SF2703  nrdE; ribonucleotide-diphosphate reductase subunit alpha [KO:K00525] [EC:1.17.4.1]
SF2317  nrdB; ribonucleoside-diphosphate reductase 1 subunit beta [KO:K00526] [EC:1.17.4.1]
SF2704  nrdF; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
SF2367  5'-deoxynucleotidase [KO:K08722] [EC:3.1.3.89]
SF1102  tmk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
SF3679  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
SF4414  deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
SF1238  tdk; thymidine kinase [KO:K00857] [EC:2.7.1.21]
SF2837  thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
SF2231  dihydropyrimidine dehydrogenase subunit A [KO:K17722] [EC:1.3.1.1]
SF1015  hypothetical protein [KO:K09018] [EC:1.14.99.46]
SF1010  hypothetical protein [KO:K09024] [EC:1.5.1.-]
SF1014  synthetase [KO:K09020] [EC:3.5.1.110]
SF1013  hypothetical protein [KO:K09021]
SF1012  acetyltransferase [KO:K09023] [EC:3.5.1.-]
SF1556  ydfG; malonic semialdehyde reductase [KO:K16066] [EC:1.1.1.381 1.1.1.-]
SF1011  malonic semialdehyde reductase [KO:K09019] [EC:1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
sfl00030  Pentose phosphate pathway
sfl00220  Arginine biosynthesis
sfl00250  Alanine, aspartate and glutamate metabolism
sfl00280  Valine, leucine and isoleucine degradation
sfl00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

DBGET integrated database retrieval system