KEGG   PATHWAY: sge00020
Entry
sge00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces griseorubiginosus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sge00020  Citrate cycle (TCA cycle)
sge00020

Module
sge_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sge00020]
sge_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sge00020]
sge_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sge00020]
sge_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sge00020]
sge_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sge00020]
Other DBs
GO: 0006099
Organism
Streptomyces griseorubiginosus [GN:sge]
Gene
DWG14_05384  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
DWG14_04737  citA_3; Putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
DWG14_02203  citA_1; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
DWG14_02204  citA_2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
DWG14_02118  acnA; Aconitate hydratase A [KO:K27802] [EC:4.2.1.3 4.2.1.99]
DWG14_01232  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
DWG14_02860  kgd; Multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
DWG14_06149  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DWG14_03516  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DWG14_03517  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DWG14_01616  sucD_1; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
DWG14_03324  sucD_2; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
DWG14_01617  sucC_1; Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
DWG14_03325  sucC_2; Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
DWG14_03043  sdhA_1; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DWG14_01161  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DWG14_03254  sdhA_2; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DWG14_03044  frdB_2; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DWG14_01160  frdB_1; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DWG14_03255  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DWG14_01162  hypothetical protein [KO:K00241]
DWG14_03252  sdhC; Succinate dehydrogenase 2 membrane subunit SdhC [KO:K00241]
DWG14_03253  hypothetical protein [KO:K00242]
DWG14_03069  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
DWG14_03070  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
DWG14_00486  ldhA; L-lactate dehydrogenase 1 [KO:K00024] [EC:1.1.1.37]
DWG14_03312  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DWG14_07480  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
DWG14_03128  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
DWG14_05911  aceE_1; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
DWG14_06145  aceE_2; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
DWG14_00448  pdhC_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
DWG14_06148  dlaT; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sge00010  Glycolysis / Gluconeogenesis
sge00053  Ascorbate and aldarate metabolism
sge00061  Fatty acid biosynthesis
sge00071  Fatty acid degradation
sge00190  Oxidative phosphorylation
sge00220  Arginine biosynthesis
sge00250  Alanine, aspartate and glutamate metabolism
sge00280  Valine, leucine and isoleucine degradation
sge00350  Tyrosine metabolism
sge00470  D-Amino acid metabolism
sge00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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