KEGG   PATHWAY: sil00030
Entry
sil00030                    Pathway                                
Name
Pentose phosphate pathway - Ruegeria pomeroyi
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sil00030  Pentose phosphate pathway
sil00030

Module
sil_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:sil00030]
sil_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:sil00030]
sil_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:sil00030]
Other DBs
GO: 0006098
Organism
Ruegeria pomeroyi [GN:sil]
Gene
SPO2046  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
SPO3033  zwf-2; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SPO2048  zwf-1; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
SPO2047  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
SPO0779  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
SPO1865  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
SPO3128  fsaB; fructose-6-phosphate aldolase 2 [KO:K00616] [EC:2.2.1.2]
SPO1327  rpiA; ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
SPO3180  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
SPO3367  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
SPO0013  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
SPO2928  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
SPO0946  algC; phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
SPO0474  phnN; alkylphosphonate utilization protein PhnN [KO:K05774] [EC:2.7.4.23]
SPO3159  prs; ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
SPO3032  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
SPOA0330  eda-2; 2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SPO3031  eda-1; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
SPOA0241  gluconolactonase, putative [KO:K01053] [EC:3.1.1.17]
SPO2559  gnl; gluconolactonase [KO:K01053] [EC:3.1.1.17]
SPOA0331  2-dehydro-3-deoxygluconokinase, putative [KO:K00874] [EC:2.7.1.45]
SPO2420  kdgK; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
SPO1564  MOFRL domain protein [KO:K11529] [EC:2.7.1.165]
SPO2993  MOFRL family protein [KO:K11529] [EC:2.7.1.165]
SPO1899  fda; fructose-bisphosphate aldolase, class I [KO:K01623] [EC:4.1.2.13]
SPO1733  glpX; fructose-1,6-bisphosphatase, class II [KO:K11532] [EC:3.1.3.11 3.1.3.37]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
sil00010  Glycolysis / Gluconeogenesis
sil00040  Pentose and glucuronate interconversions
sil00052  Galactose metabolism
sil00230  Purine metabolism
sil00240  Pyrimidine metabolism
sil00340  Histidine metabolism
sil00630  Glyoxylate and dicarboxylate metabolism
sil00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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