KEGG   PATHWAY: sls00020
Entry
sls00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces lincolnensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sls00020  Citrate cycle (TCA cycle)
sls00020

Module
sls_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sls00020]
sls_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sls00020]
sls_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sls00020]
sls_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sls00020]
sls_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sls00020]
Other DBs
GO: 0006099
Organism
Streptomyces lincolnensis [GN:sls]
Gene
SLINC_3775  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
SLINC_3155  citrate synthase [KO:K01647] [EC:2.3.3.1]
SLINC_6244  hypothetical protein [KO:K01647] [EC:2.3.3.1]
SLINC_6245  citrate synthase [KO:K01647] [EC:2.3.3.1]
SLINC_6375  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SLINC_7319  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SLINC_5684  alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
SLINC_2514  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SLINC_0022  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
SLINC_0678  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SLINC_4984  oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SLINC_4983  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SLINC_7014  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
SLINC_5177  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
SLINC_7013  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
SLINC_5176  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
SLINC_7390  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SLINC_5239  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SLINC_5487  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
SLINC_7391  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SLINC_5238  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SLINC_5486  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
SLINC_7388  cytochrome b subunit [KO:K00241]
SLINC_5241  succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
SLINC_5240  succinate dehydrogenase membrane subunit [KO:K00242]
SLINC_5431  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
SLINC_5430  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SLINC_5195  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SLINC_1231  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SLINC_5360  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
SLINC_2518  2-oxoacid dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
SLINC_2718  pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
SLINC_2515  dihydrolipoamide S-succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sls00010  Glycolysis / Gluconeogenesis
sls00053  Ascorbate and aldarate metabolism
sls00061  Fatty acid biosynthesis
sls00071  Fatty acid degradation
sls00190  Oxidative phosphorylation
sls00220  Arginine biosynthesis
sls00250  Alanine, aspartate and glutamate metabolism
sls00280  Valine, leucine and isoleucine degradation
sls00350  Tyrosine metabolism
sls00470  D-Amino acid metabolism
sls00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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