KEGG   PATHWAY: slud00900
Entry
slud00900                   Pathway                                
Name
Terpenoid backbone biosynthesis - Saccharomycodes ludwigii
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
slud00900  Terpenoid backbone biosynthesis
slud00900

Module
slud_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:slud00900]
slud_M00367  C10-C20 isoprenoid biosynthesis, non-plant eukaryotes [PATH:slud00900]
Other DBs
GO: 0009240 0016091
Organism
Saccharomycodes ludwigii [GN:slud]
Gene
SCDLUD_001947  hypothetical protein [KO:K00626] [EC:2.3.1.9]
SCDLUD_001309  hypothetical protein [KO:K01641] [EC:2.3.3.10]
SCDLUD_004349  hypothetical protein [KO:K00021] [EC:1.1.1.34]
SCDLUD_002204  hypothetical protein [KO:K00869] [EC:2.7.1.36]
SCDLUD_002225  hypothetical protein [KO:K00938] [EC:2.7.4.2]
SCDLUD_003763  hypothetical protein [KO:K01597] [EC:4.1.1.33]
SCDLUD_002126  hypothetical protein [KO:K01823] [EC:5.3.3.2]
SCDLUD_003966  hypothetical protein [KO:K00787] [EC:2.5.1.1 2.5.1.10]
SCDLUD_002007  hypothetical protein [KO:K00804] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
SCDLUD_002533  hypothetical protein [KO:K05355] [EC:2.5.1.82 2.5.1.83]
SCDLUD_002534  hypothetical protein [KO:K11778] [EC:2.5.1.87]
SCDLUD_004010  hypothetical protein [KO:K11778] [EC:2.5.1.87]
SCDLUD_000276  hypothetical protein [KO:K19177] [EC:2.5.1.87]
SCDLUD_003073  hypothetical protein [KO:K05955] [EC:2.5.1.58 2.5.1.59]
SCDLUD_002673  hypothetical protein [KO:K05954] [EC:2.5.1.58]
SCDLUD_004095  hypothetical protein [KO:K06013] [EC:3.4.24.84]
SCDLUD_005179  hypothetical protein [KO:K06013] [EC:3.4.24.84]
SCDLUD_003288  hypothetical protein [KO:K00587] [EC:2.1.1.100]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
slud00010  Glycolysis / Gluconeogenesis
slud00100  Steroid biosynthesis
slud00130  Ubiquinone and other terpenoid-quinone biosynthesis
slud00270  Cysteine and methionine metabolism
slud00510  N-Glycan biosynthesis
slud00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

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