KEGG   PATHWAY: sma00020
Entry
sma00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces avermitilis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sma00020  Citrate cycle (TCA cycle)
sma00020

Module
sma_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sma00020]
sma_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sma00020]
sma_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sma00020]
sma_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sma00020]
sma_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sma00020]
Other DBs
GO: 0006099
Organism
Streptomyces avermitilis [GN:sma]
Gene
SAVERM_2427  citA3; putative citrate synthase [KO:K01647] [EC:2.3.3.1]
SAVERM_5330  citA1; putative citrate synthase [KO:K01647] [EC:2.3.3.1]
SAVERM_3859  citA2; putative citrate synthase [KO:K01647] [EC:2.3.3.1]
SAVERM_2428  putative citrate synthase-like protein [KO:K01647] [EC:2.3.3.1]
SAVERM_2258  acnA; putative aconitase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
SAVERM_7214  icdA; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SAVERM_2972  sucA; putative 2-oxoglutarate dehydrogenase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
SAVERM_6024  lpdA1; putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAVERM_2154  lpdA2; putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SAVERM_4877  korA; putative 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
SAVERM_4876  korB; putative 2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
SAVERM_1817  sucD1; putative succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
SAVERM_3451  sucD2; putative succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
SAVERM_1818  sucC1; putative succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
SAVERM_3452  sucC2; putative succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
SAVERM_3397  sdhA1; putative succinate dehydrogenase flavoprotein subunit (complex II) [KO:K00239] [EC:1.3.5.1]
SAVERM_7308  sdhA3; putative succinate dehydrogenase flavoprotein subunit (complex II) [KO:K00239] [EC:1.3.5.1]
SAVERM_3181  sdhA2; putative succinate dehydrogenase flavoprotein subunit (complex II) [KO:K00239] [EC:1.3.5.1]
SAVERM_3398  sdhB1; putative succinate dehydrogenase iron-sulfur protein (complex II) [KO:K00240] [EC:1.3.5.1]
SAVERM_3182  sdhB2; putative succinate dehydrogenase iron-sulfur protein (complex II) [KO:K00240] [EC:1.3.5.1]
SAVERM_7309  sdhB3; putative succinate dehydrogenase iron-sulfur protein (complex II) [KO:K00240] [EC:1.3.5.1]
SAVERM_3395  sdhC1; putative succinate dehydrogenase cytochrome b-556 subunit (complex II) [KO:K00241]
SAVERM_7307  sdhC2; putative succinate dehydrogenase cytochrome b-556 subunit (complex II) [KO:K00241]
SAVERM_3396  sdhD; putative succinate dehydrogenase hydrophobic membrane anchor protein (complex II) [KO:K00242]
SAVERM_3218  fumB; putative fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
SAVERM_3221  fumC; putative fumarate hydratase C [KO:K01679] [EC:4.2.1.2]
SAVERM_3436  mdh; putative malate/lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SAVERM_3287  pckA; putative phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
SAVERM_6020  aceE2; putative pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SAVERM_5800  aceE1; putative pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
SAVERM_6022  sucB; putative dihydrolipoamide S-succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sma00010  Glycolysis / Gluconeogenesis
sma00053  Ascorbate and aldarate metabolism
sma00061  Fatty acid biosynthesis
sma00071  Fatty acid degradation
sma00190  Oxidative phosphorylation
sma00220  Arginine biosynthesis
sma00250  Alanine, aspartate and glutamate metabolism
sma00280  Valine, leucine and isoleucine degradation
sma00350  Tyrosine metabolism
sma00470  D-Amino acid metabolism
sma00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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