KEGG   PATHWAY: smac00240
Entry
smac00240                   Pathway                                
Name
Pyrimidine metabolism - Serratia marcescens subsp. marcescens Db11
Class
Metabolism; Nucleotide metabolism
Pathway map
smac00240  Pyrimidine metabolism
smac00240

Module
smac_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:smac00240]
smac_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:smac00240]
smac_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:smac00240]
smac_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:smac00240]
Other DBs
GO: 0006220 0006213
Organism
Serratia marcescens subsp. marcescens Db11 [GN:smac]
Gene
SMDB11_0026  carB; carbamoyl-phosphate synthase large subunit [KO:K01955] [EC:6.3.5.5]
SMDB11_0025  carA; carbamoyl phosphate synthetase small subunit,glutamine amidotransferase [KO:K01956] [EC:6.3.5.5]
SMDB11_4606  pyrB; aspartate carbamoyltransferase, catalytic subunit [KO:K00609] [EC:2.1.3.2]
SMDB11_4605  pyrI; aspartate carbamoyltransferase, regulatory subunit [KO:K00610]
SMDB11_3613  putative amidohydrolase [KO:K01465] [EC:3.5.2.3]
SMDB11_1154  pyrC; dihydroorotase [KO:K01465] [EC:3.5.2.3]
SMDB11_1024  pyrD; dihydroorotate dehydrogenase [KO:K00254] [EC:1.3.5.2]
SMDB11_4071  pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
SMDB11_1902  pyrF; orotidine-5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
SMDB11_3176  pyrH; uridylate kinase [KO:K09903] [EC:2.7.4.22]
SMDB11_3008  ndk; multifunctional nucleoside diphosphatekinaseand apyrimidinic endonuclease and3'-phosphodiesterase [KO:K00940] [EC:2.7.4.6]
SMDB11_0110  mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
SMDB11_3659  Maf-like protein [KO:K06287] [EC:3.6.1.-]
SMDB11_3550  hypothetical protein [KO:K07043] [EC:3.6.1.-]
SMDB11_0111  pyrG; CTP synthetase [KO:K01937] [EC:6.3.4.2]
SMDB11_0991  cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.25]
SMDB11_1985  nudG; CTP pyrophosphohydrolase [KO:K08320] [EC:3.6.1.65]
SMDB11_0843  udk; uridine/cytidine kinase [KO:K00876] [EC:2.7.1.48]
SMDB11_0391  ushA; bifunctional UDP-sugarhydrolase/5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45]
SMDB11_0139  surE; broad specificity 5'(3')-nucleotidase andpolyphosphatase [KO:K03787] [EC:3.1.3.5 3.1.3.6]
SMDB11_0469  nagD; UMP phosphatase [KO:K02566] [EC:3.1.3.5]
SMDB11_3635  iunH; inosine-uridine preferring nucleoside hydrolase [KO:K25589] [EC:3.2.2.2 3.2.2.3]
SMDB11_4341  udp; uridine phosphorylase [KO:K00757] [EC:2.4.2.3]
SMDB11_0293  hypothetical protein [KO:K09913] [EC:2.4.2.1 2.4.2.2]
SMDB11_2924  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
SMDB11_0514  putative 5'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
SMDB11_4505  cpdB; 2',3'-cyclic-nucleotide 2'-phosphodiesterase [KO:K01119] [EC:3.1.4.16 3.1.3.6]
SMDB11_0453  rihA; ribonucleoside hydrolase 1 [KO:K01250] [EC:3.2.2.-]
SMDB11_3192  putative lysine decarboxylase [KO:K06966] [EC:3.2.2.10 3.2.2.-]
SMDB11_0835  cdd; cytidine/deoxycytidine deaminase [KO:K01489] [EC:3.5.4.5]
SMDB11_3840  codA; cytosine deaminase [KO:K01485] [EC:3.5.4.1 3.5.4.21]
SMDB11_4595  nrdD; anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
SMDB11_0844  dcd; 2'-deoxycytidine 5'-triphosphate deaminase [KO:K01494] [EC:3.5.4.13]
SMDB11_2667  nrdA; ribonucleoside diphosphate reductase 1,alphasubunit [KO:K00525] [EC:1.17.4.1]
SMDB11_3113  nrdE; ribonucleoside-diphosphate reductase 2,alphasubunit [KO:K00525] [EC:1.17.4.1]
SMDB11_2668  nrdB; ribonucleoside diphosphate reductase 1,betasubunit, ferritin-like protein [KO:K00526] [EC:1.17.4.1]
SMDB11_3114  nrdF; ribonucleoside-diphosphate reductase 2,betasubunit, ferritin-like protein [KO:K00526] [EC:1.17.4.1]
SMDB11_2703  putative 5'-nucleotidase [KO:K08722] [EC:3.1.3.89]
SMDB11_2632  phage protein [KO:K06952] [EC:3.1.3.89]
SMDB11_1169  tmk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
SMDB11_4069  dut; deoxyuridine 5'-triphosphatenucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
SMDB11_4741  deoA; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
SMDB11_1974  tdk; thymidine kinase/deoxyuridine kinase [KO:K00857] [EC:2.7.1.21]
SMDB11_3214  thyA; thymidylate synthetase [KO:K00560] [EC:2.1.1.45]
SMDB11_1800  putative L-N-carbamoylase [KO:K06016] [EC:3.5.1.6 3.5.1.87]
SMDB11_1102  NADP-dependent L-serine/L-allo-threoninedehydrogenase [KO:K16066] [EC:1.1.1.381 1.1.1.-]
SMDB11_1559  NADP-dependent L-serine/L-allo-threoninedehydrogenase [KO:K16066] [EC:1.1.1.381 1.1.1.-]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
smac00030  Pentose phosphate pathway
smac00220  Arginine biosynthesis
smac00250  Alanine, aspartate and glutamate metabolism
smac00280  Valine, leucine and isoleucine degradation
smac00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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