KEGG   PATHWAY: smeo00515
Entry
smeo00515                   Pathway                                
Name
Mannose type O-glycan biosynthesis - Silurus meridionalis (southern catfish)
Description
Biosynthesis of mammalian O-mannosyl glycans is initiated by the transfer of mannose from mannose-P-Dol to serine or threonine residue, followed by extensions with N-acetylglucosamine (GlcNAc) and galactose (Gal) to generate core M1, M2 and M3 glycans. Core M1 and M2 glycans can then be further attached by fucose residues, sialic acid terminals and sulfatded glucuroinc acid terminals. Core M3 glycan is involved in the synthesis of alpha-dystroglycan, a heavily glycosylated protein found in muscle and brain tissues. Core M3 glycan contains a tandem repeat of ribitol 5-phosphate (Rbo5P) and -alpha3-GlcA-beta3-Xyl- repeating structures. Defects of genes encoding core glycans and modified core M3 glycans are associated with various congenital diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
smeo00515  Mannose type O-glycan biosynthesis
smeo00515

Module
smeo_M00872  O-glycan biosynthesis, mannose type (core M3) [PATH:smeo00515]
Other DBs
GO: 0035269
Organism
Silurus meridionalis (southern catfish) [GN:smeo]
Gene
124390408  pomt2; protein O-mannosyl-transferase 2 [KO:K00728] [EC:2.4.1.109]
124380775  pomt1; protein O-mannosyl-transferase 1 [KO:K00728] [EC:2.4.1.109]
124391842  pomgnt1; protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 [KO:K09666] [EC:2.4.1.-]
124396963  b4galt1l; beta-1,4-galactosyltransferase 1 isoform X1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
124381523  LOW QUALITY PROTEIN: beta-1,4-galactosyltransferase 1-like [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
124387942  b4galt2; beta-1,4-galactosyltransferase 2 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
124403633  si:dkey-199f5.8; beta-1,4-galactosyltransferase 3 isoform X1 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
124403474  st3gal3b; ST3 beta-galactoside alpha-2,3-sialyltransferase 3b isoform X1 [KO:K00781] [EC:2.4.3.6]
124384521  st3gal3a; ST3 beta-galactoside alpha-2,3-sialyltransferase 3a isoform X1 [KO:K00781] [EC:2.4.3.6]
124396049  b3gat1a; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1 [KO:K00735] [EC:2.4.1.135]
124393841  b3gat1b; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 [KO:K00735] [EC:2.4.1.135]
124399748  b3gat2; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 [KO:K10157] [EC:2.4.1.135]
124378558  chst10; carbohydrate sulfotransferase 10 isoform X1 [KO:K09674] [EC:2.8.2.-]
124402243  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9-like [KO:K03663] [EC:2.4.1.152]
124389712  fut9a; 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 [KO:K03663] [EC:2.4.1.152]
124376144  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9-like [KO:K03663] [EC:2.4.1.152]
124376256  4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9-like isoform X1 [KO:K03663] [EC:2.4.1.152]
124403186  alpha-(1,3)-fucosyltransferase 4-like [KO:K07632] [EC:2.4.1.-]
124396311  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B-like isoform X1 [KO:K09661] [EC:2.4.1.-]
124393300  LOW QUALITY PROTEIN: alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B-like [KO:K09661] [EC:2.4.1.-]
124383758  pomgnt2; protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 [KO:K18207] [EC:2.4.1.312]
124376785  b3galnt2; UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 2 [KO:K09654] [EC:2.4.1.313]
124394813  pomk; protein O-mannose kinase [KO:K17547] [EC:2.7.1.183]
124394611  crppa; D-ribitol-5-phosphate cytidylyltransferase [KO:K21031] [EC:2.7.7.40]
124378778  fktn; fukutin [KO:K19872] [EC:2.7.8.-]
124394622  fukutin-related protein [KO:K19873] [EC:2.7.8.-]
124396125  rxylt1; ribitol-5-phosphate xylosyltransferase 1 [KO:K21052] [EC:2.4.2.61]
124388051  b4gat1; beta-1,4-glucuronyltransferase 1 [KO:K21032] [EC:2.4.1.-]
124401200  LARGE xylosyl- and glucuronyltransferase 1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
124401575  LARGE xylosyl- and glucuronyltransferase 1-like [KO:K09668] [EC:2.4.2.- 2.4.1.-]
124395992  large2; LARGE xylosyl- and glucuronyltransferase 2 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
Compound
C00063  CTP
C00789  CDP-ribitol
C01068  D-Ribitol 5-phosphate
C02189  [Protein]-L-serine
G10617  Dolichyl phosphate D-mannose
G13026   
G13027   
G13028   
G13082   
G13083   
G13084  O-Mannose core M1
G13085   
G13086  O-Mannose core M2
G13087   
G13088   
G13089   
G13090   
G13091  O-mannose core M3
G13092  Phospho-core M3
G13093   
G13094   
G13095   
G13096   
G13097   
G13098   
G13099   
G13100   
Reference
  Authors
Praissman JL, Wells L
  Title
Mammalian O-mannosylation pathway: glycan structures, enzymes, and protein substrates.
  Journal
Biochemistry 53:3066-78 (2014)
DOI:10.1021/bi500153y
Reference
  Authors
Stalnaker SH, Stuart R, Wells L
  Title
Mammalian O-mannosylation: unsolved questions of structure/function.
  Journal
Curr Opin Struct Biol 21:603-9 (2011)
DOI:10.1016/j.sbi.2011.09.001
Reference
  Authors
Kanagawa M, Kobayashi K, Tajiri M, Manya H, Kuga A, Yamaguchi Y, Akasaka-Manya K, Furukawa J, Mizuno M, Kawakami H, Shinohara Y, Wada Y, Endo T, Toda T
  Title
Identification of a Post-translational Modification with Ribitol-Phosphate and Its Defect in Muscular Dystrophy.
  Journal
Cell Rep 14:2209-23 (2016)
DOI:10.1016/j.celrep.2016.02.017
Reference
  Authors
Manya H, Yamaguchi Y, Kanagawa M, Kobayashi K, Tajiri M, Akasaka-Manya K, Kawakami H, Mizuno M, Wada Y, Toda T, Endo T
  Title
The Muscular Dystrophy Gene TMEM5 Encodes a Ribitol beta1,4-Xylosyltransferase Required for the Functional Glycosylation of Dystroglycan.
  Journal
J Biol Chem 291:24618-24627 (2016)
DOI:10.1074/jbc.M116.751917
Related
pathway
smeo00510  N-Glycan biosynthesis
KO pathway
ko00515   
LinkDB

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