KEGG   PATHWAY: smui00020
Entry
smui00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Sphingobacterium multivorum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
smui00020  Citrate cycle (TCA cycle)
smui00020

Module
smui_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:smui00020]
smui_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:smui00020]
smui_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:smui00020]
smui_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:smui00020]
smui_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:smui00020]
Other DBs
GO: 0006099
Organism
Sphingobacterium multivorum [GN:smui]
Gene
I6J00_13600  citrate synthase [KO:K01647] [EC:2.3.3.1]
I6J00_06690  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
I6J00_05005  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
I6J00_03890  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
I6J00_05010  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
I6J00_00370  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I6J00_02500  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I6J00_12625  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
I6J00_12630  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
I6J00_22125  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
I6J00_10910  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6J00_20885  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6J00_20900  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6J00_21645  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
I6J00_20860  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
I6J00_21670  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
I6J00_03755  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I6J00_19715  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I6J00_03750  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
I6J00_19710  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
I6J00_03760  succinate dehydrogenase cytochrome b subunit [KO:K00241]
I6J00_19720  succinate dehydrogenase cytochrome b subunit [KO:K00241]
I6J00_14525  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
I6J00_12675  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I6J00_00315  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
I6J00_04990  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
I6J00_19370  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
I6J00_16795  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
I6J00_19375  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
smui00010  Glycolysis / Gluconeogenesis
smui00053  Ascorbate and aldarate metabolism
smui00061  Fatty acid biosynthesis
smui00062  Fatty acid elongation
smui00071  Fatty acid degradation
smui00190  Oxidative phosphorylation
smui00220  Arginine biosynthesis
smui00250  Alanine, aspartate and glutamate metabolism
smui00280  Valine, leucine and isoleucine degradation
smui00350  Tyrosine metabolism
smui00470  D-Amino acid metabolism
smui00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system