KEGG   PATHWAY: spas00020
Entry
spas00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus pasteuri
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
spas00020  Citrate cycle (TCA cycle)
spas00020

Module
spas_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:spas00020]
spas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:spas00020]
spas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:spas00020]
spas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:spas00020]
spas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:spas00020]
Other DBs
GO: 0006099
Organism
Staphylococcus pasteuri [GN:spas]
Gene
STP1_0255  citrate synthase [KO:K01659] [EC:2.3.3.5]
STP1_2380  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
STP1_0254  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
STP1_0009  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
STP1_0008  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
STP1_0094  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
STP1_0978  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
STP1_2154  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
STP1_2319  2-oxoacid:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
STP1_2320  2-oxoacid:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
STP1_2278  succinyl-CoA synthase, alpha subunit [KO:K01902] [EC:6.2.1.5]
STP1_2277  succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
STP1_2198  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
STP1_2199  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
STP1_2197  succinate dehydrogenase cytochrome B558 subunit [KO:K00241]
STP1_0372  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
STP1_1779  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
STP1_1114  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
STP1_2172  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
STP1_0346  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
STP1_2151  pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
STP1_2152  pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
STP1_0975  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
STP1_2153  putative dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
spas00010  Glycolysis / Gluconeogenesis
spas00061  Fatty acid biosynthesis
spas00071  Fatty acid degradation
spas00190  Oxidative phosphorylation
spas00220  Arginine biosynthesis
spas00250  Alanine, aspartate and glutamate metabolism
spas00280  Valine, leucine and isoleucine degradation
spas00470  D-Amino acid metabolism
spas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system