KEGG   PATHWAY: srai00020
Entry
srai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus ratti
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
srai00020  Citrate cycle (TCA cycle)
srai00020

Module
srai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:srai00020]
srai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:srai00020]
srai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:srai00020]
srai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:srai00020]
srai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:srai00020]
Other DBs
GO: 0006099
Organism
Staphylococcus ratti [GN:srai]
Gene
LN051_05025  citrate synthase [KO:K01647] [EC:2.3.3.1]
LN051_06490  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LN051_05030  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LN051_06280  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LN051_06285  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LN051_07715  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LN051_05870  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LN051_06795  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LN051_06790  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LN051_07025  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LN051_07030  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LN051_07500  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LN051_07495  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LN051_07505  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
LN051_04235  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LN051_09535  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LN051_00470  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LN051_02065  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LN051_07625  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LN051_04565  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LN051_07730  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LN051_07725  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
LN051_07720  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
srai00010  Glycolysis / Gluconeogenesis
srai00053  Ascorbate and aldarate metabolism
srai00061  Fatty acid biosynthesis
srai00071  Fatty acid degradation
srai00190  Oxidative phosphorylation
srai00220  Arginine biosynthesis
srai00250  Alanine, aspartate and glutamate metabolism
srai00280  Valine, leucine and isoleucine degradation
srai00350  Tyrosine metabolism
srai00470  D-Amino acid metabolism
srai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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