KEGG   PATHWAY: sse00630
Entry
sse00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Shewanella sediminis
Class
Metabolism; Carbohydrate metabolism
Pathway map
sse00630  Glyoxylate and dicarboxylate metabolism
sse00630

Module
sse_M00012  Glyoxylate cycle [PATH:sse00630]
sse_M00621  Glycine cleavage system [PATH:sse00630]
Other DBs
GO: 0046487 0043648
Organism
Shewanella sediminis [GN:sse]
Gene
Ssed_2353  isocitrate lyase and phosphorylmutase [KO:K01637] [EC:4.1.3.1]
Ssed_1415  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Ssed_1863  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
Ssed_2174  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
Ssed_2351  Malate synthase [KO:K01638] [EC:2.3.3.9]
Ssed_1414  Malate synthase [KO:K01638] [EC:2.3.3.9]
Ssed_0952  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Ssed_2819  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Ssed_0438  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Ssed_3533  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
Ssed_1473  Acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
Ssed_3537  MaoC domain protein [KO:K17865] [EC:4.2.1.55]
Ssed_3251  Catalase [KO:K03781] [EC:1.11.1.6]
Ssed_3940  Catalase [KO:K03781] [EC:1.11.1.6]
Ssed_0972  D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding [KO:K00018] [EC:1.1.1.29]
Ssed_4258  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Ssed_2632  HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]
Ssed_4160  Serine--pyruvate transaminase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Ssed_0292  glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
Ssed_1060  Glutamate--putrescine ligase [KO:K01915] [EC:6.3.1.2]
Ssed_2532  conserved hypothetical protein [KO:K01915] [EC:6.3.1.2]
Ssed_1271  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Ssed_3673  2-alkenal reductase [KO:K00281] [EC:1.4.4.2]
Ssed_3675  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Ssed_0433  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Ssed_3674  glycine cleavage system H protein [KO:K02437]
Ssed_2619  6-phosphogluconate dehydrogenase, NAD-binding [KO:K00042] [EC:1.1.1.60]
Ssed_2779  Glycerate kinase [KO:K00865] [EC:2.7.1.165]
Ssed_2073  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Ssed_0838  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Ssed_4417  molybdopterin oxidoreductase [KO:K00123] [EC:1.17.1.9]
Ssed_4421  molybdopterin oxidoreductase [KO:K00123] [EC:1.17.1.9]
Ssed_4420  4Fe-4S ferredoxin, iron-sulfur binding domain protein [KO:K00124]
Ssed_4416  4Fe-4S ferredoxin, iron-sulfur binding domain protein [KO:K00124]
Ssed_4415  formate dehydrogenase, C subunit, putative [KO:K00127]
Ssed_4419  formate dehydrogenase, gamma subunit [KO:K00127]
Ssed_2570  hypothetical protein [KO:K00127]
Ssed_4214  formate dehydrogenase, gamma subunit [KO:K00127]
Ssed_3166  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
sse00010  Glycolysis / Gluconeogenesis
sse00020  Citrate cycle (TCA cycle)
sse00030  Pentose phosphate pathway
sse00053  Ascorbate and aldarate metabolism
sse00071  Fatty acid degradation
sse00230  Purine metabolism
sse00250  Alanine, aspartate and glutamate metabolism
sse00260  Glycine, serine and threonine metabolism
sse00620  Pyruvate metabolism
sse00710  Carbon fixation by Calvin cycle
sse00750  Vitamin B6 metabolism
sse00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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