KEGG   PATHWAY: sspo00020
Entry
sspo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Streptomyces spongiicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
sspo00020  Citrate cycle (TCA cycle)
sspo00020

Module
sspo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:sspo00020]
sspo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:sspo00020]
sspo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:sspo00020]
sspo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:sspo00020]
sspo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:sspo00020]
Other DBs
GO: 0006099
Organism
Streptomyces spongiicola [GN:sspo]
Gene
DDQ41_13350  citrate synthase [KO:K01647] [EC:2.3.3.1]
DDQ41_07120  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DDQ41_24545  citrate synthase [KO:K01647] [EC:2.3.3.1]
DDQ41_24550  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
DDQ41_25970  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DDQ41_09850  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DDQ41_23355  kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
DDQ41_03590  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DDQ41_18610  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
DDQ41_18605  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
DDQ41_21265  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DDQ41_21260  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DDQ41_29405  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DDQ41_21510  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DDQ41_22495  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DDQ41_29410  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DDQ41_21505  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DDQ41_22490  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DDQ41_29400  succinate dehydrogenase [KO:K00241]
DDQ41_21520  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DDQ41_21515  succinate dehydrogenase [KO:K00242]
DDQ41_22310  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DDQ41_22300  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
DDQ41_21325  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DDQ41_00410  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
DDQ41_22040  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
DDQ41_03610  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DDQ41_04850  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DDQ41_03595  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
sspo00010  Glycolysis / Gluconeogenesis
sspo00053  Ascorbate and aldarate metabolism
sspo00061  Fatty acid biosynthesis
sspo00071  Fatty acid degradation
sspo00190  Oxidative phosphorylation
sspo00220  Arginine biosynthesis
sspo00250  Alanine, aspartate and glutamate metabolism
sspo00280  Valine, leucine and isoleucine degradation
sspo00350  Tyrosine metabolism
sspo00470  D-Amino acid metabolism
sspo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system