KEGG   PATHWAY: suri00020
Entry
suri00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Serratia ureilytica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
suri00020  Citrate cycle (TCA cycle)
suri00020

Module
suri_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:suri00020]
suri_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:suri00020]
suri_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:suri00020]
suri_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:suri00020]
suri_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:suri00020]
Other DBs
GO: 0006099
Organism
Serratia ureilytica [GN:suri]
Gene
J0X03_17705  citrate synthase [KO:K01647] [EC:2.3.3.1]
J0X03_10635  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
J0X03_03340  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
J0X03_13725  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J0X03_17680  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
J0X03_17675  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
J0X03_00485  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J0X03_03335  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J0X03_17665  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
J0X03_17670  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
J0X03_17690  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
J0X03_17685  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
J0X03_17700  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
J0X03_17695  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
J0X03_22200  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
J0X03_22205  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
J0X03_22210  frdC; fumarate reductase subunit FrdC [KO:K00246]
J0X03_22215  frdD; fumarate reductase subunit FrdD [KO:K00247]
J0X03_03280  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
J0X03_12545  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
J0X03_21925  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J0X03_16195  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
J0X03_01220  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
J0X03_13460  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
J0X03_03325  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
J0X03_08775  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
J0X03_03330  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
J0X03_10980  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
suri00010  Glycolysis / Gluconeogenesis
suri00053  Ascorbate and aldarate metabolism
suri00061  Fatty acid biosynthesis
suri00071  Fatty acid degradation
suri00190  Oxidative phosphorylation
suri00220  Arginine biosynthesis
suri00250  Alanine, aspartate and glutamate metabolism
suri00280  Valine, leucine and isoleucine degradation
suri00350  Tyrosine metabolism
suri00470  D-Amino acid metabolism
suri00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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