KEGG   PATHWAY: swa00020
Entry
swa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Staphylococcus warneri
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
swa00020  Citrate cycle (TCA cycle)
swa00020

Module
swa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:swa00020]
swa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:swa00020]
swa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:swa00020]
swa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:swa00020]
swa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:swa00020]
Other DBs
GO: 0006099
Organism
Staphylococcus warneri [GN:swa]
Gene
A284_05315  citrate synthase [KO:K01659] [EC:2.3.3.5]
A284_06880  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
A284_05320  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A284_06570  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A284_06575  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A284_02065  hypothetical protein [KO:K00382] [EC:1.8.1.4]
A284_06140  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A284_08350  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
A284_07175  hypothetical protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
A284_07170  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A284_07380  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
A284_07385  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
A284_08130  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A284_08125  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A284_08135  succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
A284_04735  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A284_09860  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A284_01420  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A284_02685  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A284_08260  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
A284_04870  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
A284_08365  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
A284_08360  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
A284_02080  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
A284_08355  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
swa00010  Glycolysis / Gluconeogenesis
swa00053  Ascorbate and aldarate metabolism
swa00061  Fatty acid biosynthesis
swa00071  Fatty acid degradation
swa00190  Oxidative phosphorylation
swa00220  Arginine biosynthesis
swa00250  Alanine, aspartate and glutamate metabolism
swa00280  Valine, leucine and isoleucine degradation
swa00470  D-Amino acid metabolism
swa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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