KEGG   PATHWAY: thi00020
Entry
thi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thiomonas arsenitoxydans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
thi00020  Citrate cycle (TCA cycle)
thi00020

Module
thi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:thi00020]
thi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:thi00020]
thi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:thi00020]
thi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:thi00020]
Other DBs
GO: 0006099
Organism
Thiomonas arsenitoxydans [GN:thi]
Gene
THI_2710  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
THI_2722  acnA; Aconitate hydratase 1 (Citrate hydro-lyase 1) (Aconitase 1) [KO:K01681] [EC:4.2.1.3]
THI_1758  icd; isocitrate dehydrogenase, specific for NADP+; e14 prophage [KO:K00031] [EC:1.1.1.42]
THI_2911  idh2; Isocitrate dehydrogenase [NAD] subunit 2 (Isocitric dehydrogenase) (NAD(+)-specific ICDH) [KO:K00030] [EC:1.1.1.41]
THI_1671  sucA; 2-oxoglutarate dehydrogenase E1 component (Alpha-ketoglutarate dehydrogenase) [KO:K00164] [EC:1.2.4.2]
THI_1672  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2) (Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex) [KO:K00658] [EC:2.3.1.61]
THI_0061  putative Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
THI_2235  putative Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
THI_2678  lpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) [KO:K00382] [EC:1.8.1.4]
THI_1673  odhL; Dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate dehydrogenase complex) (Dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
THI_1046  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha (Succinyl-CoA synthetase subunit alpha) (SCS-alpha) [KO:K01902] [EC:6.2.1.5]
THI_1045  sucC; Succinyl-CoA synthetase beta chain (SCS-beta) [KO:K01903] [EC:6.2.1.5]
THI_2713  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
THI_2712  sdhB; Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
THI_2715  putative Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556) (sdhC) [KO:K00241]
THI_2714  putative Succinate dehydrogenase hydrophobic membrane anchor protein (sdhD) [KO:K00242]
THI_2399  putative Iron-dependent fumarate hydratase [KO:K01676] [EC:4.2.1.2]
THI_2117  fumC; Fumarate hydratase class II (Fumarase C) [KO:K01679] [EC:4.2.1.2]
THI_2717  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
THI_2680  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
THI_0517  putative Pyruvate dehydrogenase E1 component subunit alpha PdhA [KO:K00161] [EC:1.2.4.1]
THI_0518  pdhB; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
THI_0519  putative Dihydrolipoyllysine-residue succinyltransferase [KO:K00627] [EC:2.3.1.12]
THI_0480  acoC; Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system (Acetoin dehydrogenase E2 component) (Dihydrolipoamide acetyltransferase component of acetoin cleaving system) (Fast-migrating protein) (FMP) [KO:K00627] [EC:2.3.1.12]
THI_2679  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
thi00010  Glycolysis / Gluconeogenesis
thi00061  Fatty acid biosynthesis
thi00071  Fatty acid degradation
thi00190  Oxidative phosphorylation
thi00220  Arginine biosynthesis
thi00250  Alanine, aspartate and glutamate metabolism
thi00280  Valine, leucine and isoleucine degradation
thi00350  Tyrosine metabolism
thi00470  D-Amino acid metabolism
thi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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