KEGG   PATHWAY: tlr00230
Entry
tlr00230                    Pathway                                
Name
Purine metabolism - Thiorhodovibrio litoralis
Class
Metabolism; Nucleotide metabolism
Pathway map
tlr00230  Purine metabolism
tlr00230

Module
tlr_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:tlr00230]
tlr_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:tlr00230]
tlr_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:tlr00230]
tlr_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:tlr00230]
tlr_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:tlr00230]
Other DBs
GO: 0006163 0042278
Organism
Thiorhodovibrio litoralis [GN:tlr]
Gene
Thiosp_02993  nudF; ADP-ribose pyrophosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
Thiosp_00530  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
Thiosp_00615  algC; Phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
Thiosp_03446  prs; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Thiosp_02562  purF; Amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
Thiosp_01166  purD; Phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
Thiosp_01390  purN; Phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
Thiosp_04473  purL; Phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
Thiosp_01391  purM; Phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
Thiosp_03009  purK; N5-carboxyaminoimidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
Thiosp_03008  purE; N5-carboxyaminoimidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
Thiosp_01078  purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
Thiosp_01406  purB; Adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
Thiosp_01168  purH; Bifunctional purine biosynthesis protein PurH [KO:K00602] [EC:2.1.2.3 3.5.4.10]
Thiosp_04464  5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
Thiosp_01715  yfkN_1; Trifunctional nucleotide phosphoesterase protein YfkN precursor [KO:K11751] [EC:3.1.3.5 3.6.1.45]
Thiosp_02100  yfkN_2; Trifunctional nucleotide phosphoesterase protein YfkN precursor [KO:K11751] [EC:3.1.3.5 3.6.1.45]
Thiosp_03247  yfkN_4; Trifunctional nucleotide phosphoesterase protein YfkN precursor [KO:K11751] [EC:3.1.3.5 3.6.1.45]
Thiosp_02313  surE; 5'/3'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
Thiosp_03550  yrfG; GMP/IMP nucleotidase YrfG [KO:K20881] [EC:3.1.3.-]
Thiosp_00125  yfiH; Laccase domain protein YfiH [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
Thiosp_00875  hpt; Hypoxanthine-guanine phosphoribosyltransferase [KO:K00760] [EC:2.4.2.8]
Thiosp_01907  guaB; Inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
Thiosp_04214  ndk; Nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
Thiosp_00606  rdgB; dITP/XTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
Thiosp_01906  guaA_1; GMP synthase [glutamine-hydrolyzing] [KO:K01951] [EC:6.3.5.2]
Thiosp_00686  guaC; GMP reductase [KO:K00364] [EC:1.7.1.7]
Thiosp_00602  gmk; Guanylate kinase [KO:K00942] [EC:2.7.4.8]
Thiosp_03876  nrdA; Ribonucleoside-diphosphate reductase 1 subunit alpha [KO:K00525] [EC:1.17.4.1]
Thiosp_03878  nrdB; Ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
Thiosp_00351  nrdD; Anaerobic ribonucleoside-triphosphate reductase [KO:K21636] [EC:1.1.98.6]
Thiosp_00600  spoT; Bifunctional (p)ppGpp synthase/hydrolase SpoT [KO:K01139] [EC:2.7.6.5 3.1.7.2]
Thiosp_01633  ppx; Exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
Thiosp_00361  relA; GTP pyrophosphokinase [KO:K00951] [EC:2.7.6.5]
Thiosp_01074  CYTH domain protein [KO:K01768] [EC:4.6.1.1]
Thiosp_03771  purA; Adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
Thiosp_00532  adk; Adenylate kinase [KO:K00939] [EC:2.7.4.3]
Thiosp_00105  mazG; Nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9]
Thiosp_02798  apaH; Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [KO:K01525] [EC:3.6.1.41]
Thiosp_02505  cysC; Adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
Thiosp_01611  sat; Sulfate adenylyltransferase [KO:K00958] [EC:2.7.7.4]
Thiosp_01977  putative urate catabolism protein [KO:K16842] [EC:3.5.2.5]
Thiosp_01033  ureC_1; Urease subunit alpha [KO:K01428] [EC:3.5.1.5]
Thiosp_02689  ureC_2; Urease subunit alpha [KO:K01428] [EC:3.5.1.5]
Thiosp_01032  ureB_1; Urease subunit beta [KO:K01429] [EC:3.5.1.5]
Thiosp_02690  ureB_2; Urease subunit beta [KO:K01429] [EC:3.5.1.5]
Thiosp_01031  ureA_1; Urease subunit gamma [KO:K01430] [EC:3.5.1.5]
Thiosp_02691  ureA_2; Urease subunit gamma [KO:K01430] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
tlr00030  Pentose phosphate pathway
tlr00220  Arginine biosynthesis
tlr00250  Alanine, aspartate and glutamate metabolism
tlr00260  Glycine, serine and threonine metabolism
tlr00340  Histidine metabolism
tlr00630  Glyoxylate and dicarboxylate metabolism
tlr00730  Thiamine metabolism
tlr00740  Riboflavin metabolism
tlr00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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