KEGG   PATHWAY: tms00020
Entry
tms00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tremella mesenterica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tms00020  Citrate cycle (TCA cycle)
tms00020

Module
tms_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tms00020]
tms_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tms00020]
tms_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tms00020]
tms_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tms00020]
tms_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tms00020]
Other DBs
GO: 0006099
Organism
Tremella mesenterica [GN:tms]
Gene
TREMEDRAFT_57897  hypothetical protein [KO:K01647] [EC:2.3.3.1]
TREMEDRAFT_71104  hypothetical protein [KO:K01648] [EC:2.3.3.8]
TREMEDRAFT_40787  hypothetical protein [KO:K01681] [EC:4.2.1.3]
TREMEDRAFT_72515  hypothetical protein [KO:K00031] [EC:1.1.1.42]
TREMEDRAFT_42572  hypothetical protein [KO:K00030] [EC:1.1.1.41]
TREMEDRAFT_26712  hypothetical protein [KO:K00030] [EC:1.1.1.41]
TREMEDRAFT_39155  hypothetical protein [KO:K00164] [EC:1.2.4.2]
TREMEDRAFT_39108  hypothetical protein [KO:K00658] [EC:2.3.1.61]
TREMEDRAFT_39666  hypothetical protein [KO:K00382] [EC:1.8.1.4]
TREMEDRAFT_32236  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
TREMEDRAFT_43527  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
TREMEDRAFT_38067  hypothetical protein [KO:K00234] [EC:1.3.5.1]
TREMEDRAFT_42851  hypothetical protein [KO:K00235] [EC:1.3.5.1]
TREMEDRAFT_43131  hypothetical protein [KO:K00236]
TREMEDRAFT_43822  hypothetical protein [KO:K00237]
TREMEDRAFT_44268  hypothetical protein [KO:K01679] [EC:4.2.1.2]
TREMEDRAFT_42859  hypothetical protein [KO:K00026] [EC:1.1.1.37]
TREMEDRAFT_73330  hypothetical protein [KO:K00026] [EC:1.1.1.37]
TREMEDRAFT_45883  hypothetical protein [KO:K01958] [EC:6.4.1.1]
TREMEDRAFT_41495  hypothetical protein [KO:K01610] [EC:4.1.1.49]
TREMEDRAFT_44393  hypothetical protein [KO:K00161] [EC:1.2.4.1]
TREMEDRAFT_73309  hypothetical protein [KO:K00162] [EC:1.2.4.1]
TREMEDRAFT_74672  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tms00010  Glycolysis / Gluconeogenesis
tms00053  Ascorbate and aldarate metabolism
tms00061  Fatty acid biosynthesis
tms00062  Fatty acid elongation
tms00071  Fatty acid degradation
tms00190  Oxidative phosphorylation
tms00220  Arginine biosynthesis
tms00250  Alanine, aspartate and glutamate metabolism
tms00280  Valine, leucine and isoleucine degradation
tms00350  Tyrosine metabolism
tms00470  D-Amino acid metabolism
tms00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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