KEGG   PATHWAY: tre03420
Entry
tre03420                    Pathway                                
Name
Nucleotide excision repair - Trichoderma reesei QM6a
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
tre03420  Nucleotide excision repair
tre03420

Other DBs
GO: 0006289
Organism
Trichoderma reesei QM6a [GN:tre]
Gene
TRIREDRAFT_121950  hypothetical protein [KO:K03868] [EC:2.3.2.32]
TRIREDRAFT_5148  hypothetical protein [KO:K10609]
TRIREDRAFT_56582  hypothetical protein [KO:K10610]
TRIREDRAFT_61075  hypothetical protein [KO:K10838]
TRIREDRAFT_75205  DNA repair rad4-like protein [KO:K10838]
TRIREDRAFT_102581  hypothetical protein [KO:K10839]
TRIREDRAFT_22637  hypothetical protein [KO:K10570]
TRIREDRAFT_62057  hypothetical protein [KO:K10841]
TRIREDRAFT_79315  hypothetical protein [KO:K03006] [EC:2.7.7.6]
TRIREDRAFT_79225  rpb2; beta subunit of DNA-directed RNA polymerase [KO:K03010] [EC:2.7.7.6]
TRIREDRAFT_78726  hypothetical protein [KO:K03011]
TRIREDRAFT_65640  hypothetical protein [KO:K03012]
TRIREDRAFT_55185  hypothetical protein [KO:K03013]
TRIREDRAFT_61815  hypothetical protein [KO:K03014]
TRIREDRAFT_63547  hypothetical protein [KO:K03015]
TRIREDRAFT_104015  hypothetical protein [KO:K03016]
TRIREDRAFT_81043  hypothetical protein [KO:K03017]
TRIREDRAFT_64752  hypothetical protein [KO:K03007]
TRIREDRAFT_102976  hypothetical protein [KO:K03009]
TRIREDRAFT_74444  hypothetical protein [KO:K03008]
TRIREDRAFT_69217  protease-like protein [KO:K02202] [EC:2.7.11.22 2.7.11.23]
TRIREDRAFT_67957  kinase [KO:K10842]
TRIREDRAFT_69793  hypothetical protein [KO:K06634]
TRIREDRAFT_120753  Rad3 protein [KO:K10843] [EC:5.6.2.4]
TRIREDRAFT_112413  rhp3; DNA excision repair helicase [KO:K10844] [EC:5.6.2.3]
TRIREDRAFT_110931  hypothetical protein [KO:K10845]
TRIREDRAFT_66091  hypothetical protein [KO:K03141]
TRIREDRAFT_77991  hypothetical protein [KO:K03142]
TRIREDRAFT_67476  hypothetical protein [KO:K03143]
TRIREDRAFT_60634  trancription factor tfb2-like protein [KO:K03144]
TRIREDRAFT_79304  hypothetical protein [KO:K10846]
TRIREDRAFT_69998  hypothetical protein [KO:K10847]
TRIREDRAFT_71468  replication factor A-like protein [KO:K07466]
TRIREDRAFT_55902  hypothetical protein [KO:K10739]
TRIREDRAFT_59964  hypothetical protein [KO:K10740]
TRIREDRAFT_72108  mus38; DNA repair protein [KO:K10848] [EC:3.1.-.-]
TRIREDRAFT_57198  hypothetical protein [KO:K10849]
TRIREDRAFT_2095  DNA polymerase delta, catalytic subunit [KO:K02327] [EC:2.7.7.7]
TRIREDRAFT_102401  hypothetical protein [KO:K02328]
TRIREDRAFT_75069  hypothetical protein [KO:K03504]
TRIREDRAFT_61551  hypothetical protein [KO:K03505]
TRIREDRAFT_3779  DNA polymerase epsilon, catalytic subunit A [KO:K02324] [EC:2.7.7.7]
TRIREDRAFT_58184  hypothetical protein [KO:K02325] [EC:2.7.7.7]
TRIREDRAFT_108421  hypothetical protein [KO:K02326] [EC:2.7.7.7]
TRIREDRAFT_120486  proliferating cell nuclear antigen [KO:K04802]
TRIREDRAFT_25225  replication factor C, subunit 1-like protein [KO:K10754]
TRIREDRAFT_122392  hypothetical protein [KO:K10755]
TRIREDRAFT_44459  replication factor C subunit 4 [KO:K10755]
TRIREDRAFT_73778  replication factor C, subunit 5-like protein [KO:K10756]
TRIREDRAFT_61544  replication factor C, subunit 3 [KO:K10756]
TRIREDRAFT_22881  DNA ligase [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
tre03020  RNA polymerase
tre04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   
LinkDB

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