KEGG   PATHWAY: tsn00020
Entry
tsn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Pseudothioglobus singularis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tsn00020  Citrate cycle (TCA cycle)
tsn00020

Module
tsn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tsn00020]
tsn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tsn00020]
Other DBs
GO: 0006099
Organism
Candidatus Pseudothioglobus singularis [GN:tsn]
Gene
W908_00175  citrate synthase [KO:K01659] [EC:2.3.3.5]
W908_07645  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
W908_03105  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
W908_05705  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
W908_07500  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
W908_01220  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
W908_01225  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
W908_02190  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
W908_02195  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
W908_02185  hypothetical protein [KO:K00241]
W908_02330  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
W908_02200  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
W908_01120  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
W908_03715  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
W908_07495  dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tsn00010  Glycolysis / Gluconeogenesis
tsn00053  Ascorbate and aldarate metabolism
tsn00061  Fatty acid biosynthesis
tsn00071  Fatty acid degradation
tsn00190  Oxidative phosphorylation
tsn00220  Arginine biosynthesis
tsn00250  Alanine, aspartate and glutamate metabolism
tsn00280  Valine, leucine and isoleucine degradation
tsn00350  Tyrosine metabolism
tsn00470  D-Amino acid metabolism
tsn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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