KEGG   PATHWAY: vci00020
Entry
vci00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio cholerae O1 IEC224
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vci00020  Citrate cycle (TCA cycle)
vci00020

Module
vci_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vci00020]
vci_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vci00020]
vci_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vci00020]
vci_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vci00020]
vci_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vci00020]
Other DBs
GO: 0006099
Organism
Vibrio cholerae O1 IEC224 [GN:vci]
Gene
O3Y_10105  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
O3Y_02810  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
O3Y_05320  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
O3Y_10080  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
O3Y_10075  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
O3Y_12635  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
O3Y_11550  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
O3Y_10065  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
O3Y_10070  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
O3Y_10090  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
O3Y_10085  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
O3Y_10100  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
O3Y_10095  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
O3Y_12705  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
O3Y_12710  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
O3Y_12715  fumarate reductase subunit C [KO:K00246]
O3Y_12720  fumarate reductase subunit D [KO:K00247]
O3Y_06070  fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
O3Y_07630  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
O3Y_02000  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
O3Y_13100  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
O3Y_11560  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
O3Y_11555  aceF; pyruvate dehydrogenase dihydrolipoyltransacetylase [KO:K00627] [EC:2.3.1.12]
O3Y_16023  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vci00010  Glycolysis / Gluconeogenesis
vci00053  Ascorbate and aldarate metabolism
vci00061  Fatty acid biosynthesis
vci00071  Fatty acid degradation
vci00190  Oxidative phosphorylation
vci00220  Arginine biosynthesis
vci00250  Alanine, aspartate and glutamate metabolism
vci00280  Valine, leucine and isoleucine degradation
vci00350  Tyrosine metabolism
vci00470  D-Amino acid metabolism
vci00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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