KEGG   PATHWAY: vsc00020
Entry
vsc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vibrio scophthalmi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vsc00020  Citrate cycle (TCA cycle)
vsc00020

Module
vsc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vsc00020]
vsc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vsc00020]
vsc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vsc00020]
vsc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vsc00020]
vsc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vsc00020]
Other DBs
GO: 0006099
Organism
Vibrio scophthalmi [GN:vsc]
Gene
VSVS12_02370  gltA; Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
VSVS12_00688  acnB; Aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
VSVS12_02168  idh1; Isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
VSVS12_02365  ogdH; Oxoglutarate dehydrogenase (succinyl-transferring) [KO:K00164] [EC:1.2.4.2]
VSVS12_02364  dlsT; Dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
VSVS12_00430  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
VSVS12_00669  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
VSVS12_02362  sucD; Succinate--CoA ligase (ADP-forming) [KO:K01902] [EC:6.2.1.5]
VSVS12_02363  sucC; Succinate--CoA ligase (ADP-forming) [KO:K01903] [EC:6.2.1.5]
VSVS12_02367  sdhA; Succinate dehydrogenase (quinone) [KO:K00239] [EC:1.3.5.1]
VSVS12_02366  sdhB; Succinate dehydrogenase (quinone) [KO:K00240] [EC:1.3.5.1]
VSVS12_02369  Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
VSVS12_02368  Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
VSVS12_00415  frdA; Fumarate reductase (quinol) [KO:K00244] [EC:1.3.5.1]
VSVS12_00414  frdB; Fumarate reductase (quinol) [KO:K00245] [EC:1.3.5.1]
VSVS12_00413  Fumarate reductase subunit [KO:K00246]
VSVS12_00412  Fumarate reductase subunit [KO:K00247]
VSVS12_01896  fumA; Fumarate hydratase [KO:K01676] [EC:4.2.1.2]
VSVS12_00630  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
VSVS12_00285  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
VSVS12_00667  aceE; Pyruvate dehydrogenase (acetyl-transferring) [KO:K00163] [EC:1.2.4.1]
VSVS12_00668  dlaT; Dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vsc00010  Glycolysis / Gluconeogenesis
vsc00053  Ascorbate and aldarate metabolism
vsc00061  Fatty acid biosynthesis
vsc00071  Fatty acid degradation
vsc00190  Oxidative phosphorylation
vsc00220  Arginine biosynthesis
vsc00250  Alanine, aspartate and glutamate metabolism
vsc00280  Valine, leucine and isoleucine degradation
vsc00350  Tyrosine metabolism
vsc00470  D-Amino acid metabolism
vsc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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