KEGG   PATHWAY: xcv00020
Entry
xcv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Xanthomonas campestris pv. vesicatoria
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xcv00020  Citrate cycle (TCA cycle)
xcv00020

Module
xcv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:xcv00020]
xcv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xcv00020]
xcv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xcv00020]
xcv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:xcv00020]
Other DBs
GO: 0006099
Organism
Xanthomonas campestris pv. vesicatoria [GN:xcv]
Gene
XCV3504  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
XCV1924  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
XCV1927  acnB; aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
XCV3960  icd; Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
XCV1076  Isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
XCV1578  sucA; Oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
XCV1577  sucB; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
XCV2303  putative pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
XCV1576  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
XCV3777  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
XCV3348  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
XCV3349  succ; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
XCV2243  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
XCV2245  putative succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
XCV2241  putative succinate dehydrogenase [KO:K00241]
XCV2242  putative succinate dehydrogenase membrane anchor subunit [KO:K00242]
XCV1517  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
XCV1585  putative fumarate hydratase [KO:K01679] [EC:4.2.1.2]
XCV1034  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
XCV0611  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
XCV3779  putative dihydrolipoamide acetyltranferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xcv00010  Glycolysis / Gluconeogenesis
xcv00053  Ascorbate and aldarate metabolism
xcv00061  Fatty acid biosynthesis
xcv00071  Fatty acid degradation
xcv00190  Oxidative phosphorylation
xcv00220  Arginine biosynthesis
xcv00250  Alanine, aspartate and glutamate metabolism
xcv00280  Valine, leucine and isoleucine degradation
xcv00350  Tyrosine metabolism
xcv00470  D-Amino acid metabolism
xcv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system