KEGG   PATHWAY: xhd00020
Entry
xhd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Xanthomonas hydrangeae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xhd00020  Citrate cycle (TCA cycle)
xhd00020

Module
xhd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:xhd00020]
xhd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xhd00020]
xhd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xhd00020]
xhd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:xhd00020]
Other DBs
GO: 0006099
Organism
Xanthomonas hydrangeae [GN:xhd]
Gene
LMG31886_09920  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
LMG31886_24270  acn; Aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
LMG31886_24240  acnB; Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LMG31886_39770  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
LMG31886_33000  hicd; Homoisocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
LMG31886_27930  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LMG31886_27940  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
LMG31886_27950  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMG31886_37460  sthA; Soluble pyridine nucleotide transhydrogenase [KO:K00382] [EC:1.8.1.4]
LMG31886_11320  sucD; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
LMG31886_11310  sucC; Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
LMG31886_06310  Succinyl-CoA:acetate CoA-transferase [KO:K18118] [EC:2.8.3.18]
LMG31886_20330  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LMG31886_20350  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LMG31886_20310  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
LMG31886_20320  hypothetical protein [KO:K00242]
LMG31886_28500  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
LMG31886_27870  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
LMG31886_33410  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LMG31886_06690  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
LMG31886_37480  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xhd00010  Glycolysis / Gluconeogenesis
xhd00053  Ascorbate and aldarate metabolism
xhd00061  Fatty acid biosynthesis
xhd00071  Fatty acid degradation
xhd00190  Oxidative phosphorylation
xhd00220  Arginine biosynthesis
xhd00250  Alanine, aspartate and glutamate metabolism
xhd00280  Valine, leucine and isoleucine degradation
xhd00350  Tyrosine metabolism
xhd00470  D-Amino acid metabolism
xhd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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