KEGG   PATHWAY: yps00020
Entry
yps00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Yersinia pseudotuberculosis IP 32953 (serotype I)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
yps00020  Citrate cycle (TCA cycle)
yps00020

Module
yps_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:yps00020]
yps_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:yps00020]
yps_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:yps00020]
yps_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:yps00020]
yps_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:yps00020]
Other DBs
GO: 0006099
Organism
Yersinia pseudotuberculosis IP 32953 (serotype I) [GN:yps]
Gene
YPTB1142  gltA; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
YPTB2143  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
YPTB0716  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
YPTB2427  icdA; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
YPTB1147  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
YPTB1148  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutar... [KO:K00658] [EC:2.3.1.61]
YPTB0118  putative pyridine nucleotide-disulphide oxidoreductase [KO:K00382] [EC:1.8.1.4]
YPTB0715  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
YPTB1150  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
YPTB1149  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
YPTB1145  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
YPTB1146  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
YPTB1143  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
YPTB1144  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
YPTB0413  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
YPTB0412  frdB; fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
YPTB0411  frdC; fumarate reductase hydrophobic protei [KO:K00246]
YPTB0410  frdD; fumarate reductase hydrophobic protein [KO:K00247]
YPTB0796  fumA; fumarase A (fumarate hydratase class I), aerobic isozyme [KO:K01676] [EC:4.2.1.2]
YPTB2186  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
YPTB0460  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
YPTB3762  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
YPTB0713  aceE; pyruvate dehydrogenase, decarboxylase component, thiamin-binding [KO:K00163] [EC:1.2.4.1]
YPTB0714  aceF; pyruvate dehydrogenase, dihydrolipoyltransacetylase component [KO:K00627] [EC:2.3.1.12]
YPTB2253  nifJ; putative pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
yps00010  Glycolysis / Gluconeogenesis
yps00053  Ascorbate and aldarate metabolism
yps00061  Fatty acid biosynthesis
yps00071  Fatty acid degradation
yps00190  Oxidative phosphorylation
yps00220  Arginine biosynthesis
yps00250  Alanine, aspartate and glutamate metabolism
yps00280  Valine, leucine and isoleucine degradation
yps00350  Tyrosine metabolism
yps00470  D-Amino acid metabolism
yps00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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