KEGG   PATHWAY: pez00020
Entry
pez00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas eucalypticola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pez00020  Citrate cycle (TCA cycle)
pez00020

Module
pez_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pez00020]
pez_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pez00020]
pez_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pez00020]
pez_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pez00020]
pez_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pez00020]
pez_M00982  Methylcitrate cycle [PATH:pez00020]
Other DBs
GO: 0006099
Organism
Pseudomonas eucalypticola [GN:pez]
Gene
HWQ56_00555  [KO:K18118] [EC:2.8.3.18]
HWQ56_01660  [KO:K01610] [EC:4.1.1.49]
HWQ56_02460  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
HWQ56_02465  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HWQ56_04660  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HWQ56_08090  acnA; aconitate hydratase AcnA [KO:K27802]
HWQ56_08145  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HWQ56_08670  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HWQ56_08675  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HWQ56_08680  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HWQ56_08685  [KO:K00239] [EC:1.3.5.1]
HWQ56_08690  [KO:K00240] [EC:1.3.5.1]
HWQ56_08695  [KO:K00164] [EC:1.2.4.2]
HWQ56_08700  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HWQ56_08705  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HWQ56_08710  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HWQ56_08715  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HWQ56_09605  [KO:K00031] [EC:1.1.1.42]
HWQ56_09610  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HWQ56_12435  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HWQ56_12705  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
HWQ56_14965  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HWQ56_19075  [KO:K00627] [EC:2.3.1.12]
HWQ56_21500  [KO:K01679] [EC:4.2.1.2]
HWQ56_23735  [KO:K01676] [EC:4.2.1.2]
HWQ56_24275  [KO:K01679] [EC:4.2.1.2]
HWQ56_28500  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
HWQ56_28505  [KO:K01959] [EC:6.4.1.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pez00010  Glycolysis / Gluconeogenesis
pez00053  Ascorbate and aldarate metabolism
pez00061  Fatty acid biosynthesis
pez00071  Fatty acid degradation
pez00190  Oxidative phosphorylation
pez00220  Arginine biosynthesis
pez00250  Alanine, aspartate and glutamate metabolism
pez00280  Valine, leucine and isoleucine degradation
pez00350  Tyrosine metabolism
pez00470  D-Amino acid metabolism
pez00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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