KEGG   PATHWAY: pfv00020
Entry
pfv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas fulva
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pfv00020  Citrate cycle (TCA cycle)
pfv00020

Module
pfv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pfv00020]
pfv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pfv00020]
pfv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pfv00020]
pfv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pfv00020]
pfv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pfv00020]
Other DBs
GO: 0006099
Organism
Pseudomonas fulva [GN:pfv]
Gene
Psefu_2498  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Psefu_2540  2-methylcitrate synthase/citrate synthase II [KO:K01659] [EC:2.3.3.5]
Psefu_2848  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Psefu_2443  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Psefu_2325  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Psefu_2493  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Psefu_2492  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Psefu_2491  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Psefu_2489  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Psefu_2490  Succinyl-CoA ligase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
Psefu_2495  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Psefu_2494  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Psefu_2497  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Psefu_2496  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Psefu_1315  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
Psefu_2777  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Psefu_3683  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Psefu_3397  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Psefu_2100  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Psefu_4413  acetyl-CoA carboxylase, biotin carboxylase [KO:K01959] [EC:6.4.1.1]
Psefu_4412  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
Psefu_4025  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Psefu_4193  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Psefu_4194  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pfv00010  Glycolysis / Gluconeogenesis
pfv00053  Ascorbate and aldarate metabolism
pfv00061  Fatty acid biosynthesis
pfv00071  Fatty acid degradation
pfv00190  Oxidative phosphorylation
pfv00220  Arginine biosynthesis
pfv00250  Alanine, aspartate and glutamate metabolism
pfv00280  Valine, leucine and isoleucine degradation
pfv00350  Tyrosine metabolism
pfv00470  D-Amino acid metabolism
pfv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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