KEGG   PATHWAY: pgv00230
Entry
pgv00230                    Pathway                                
Name
Purine metabolism - Polymorphum gilvum
Class
Metabolism; Nucleotide metabolism
Pathway map
pgv00230  Purine metabolism
pgv00230

Module
pgv_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:pgv00230]
pgv_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:pgv00230]
pgv_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:pgv00230]
pgv_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:pgv00230]
pgv_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:pgv00230]
pgv_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:pgv00230]
Other DBs
GO: 0006163 0042278
Organism
Polymorphum gilvum [GN:pgv]
Gene
SL003B_0024  [KO:K01519] [EC:3.6.1.66]
SL003B_0103  ureC; Urease subunit alpha [KO:K01428] [EC:3.5.1.5]
SL003B_0105  ureB; Urease subunit beta [KO:K01429] [EC:3.5.1.5]
SL003B_0106  ureA; Urease subunit gamma [KO:K01430] [EC:3.5.1.5]
SL003B_0128  [KO:K00760] [EC:2.4.2.8]
SL003B_0148  purH; IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase [KO:K00602] [EC:2.1.2.3 3.5.4.10]
SL003B_0404  guaA2; Class I glutamine amidotransferase domain protein [KO:K01951] [EC:6.3.5.2]
SL003B_0456  [KO:K01768] [EC:4.6.1.1]
SL003B_0774  [KO:K01768] [EC:4.6.1.1]
SL003B_0811  [KO:K22602] [EC:3.5.1.126]
SL003B_0883  [KO:K01589] [EC:6.3.4.18]
SL003B_0884  purE; Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit [KO:K01588] [EC:5.4.99.18]
SL003B_0913  [KO:K09769] [EC:3.1.4.16]
SL003B_0934  [KO:K01939] [EC:6.3.4.4]
SL003B_1095  [KO:K00948] [EC:2.7.6.1]
SL003B_1176  apt; Adenine phosphoribosyltransferase protein [KO:K00759] [EC:2.4.2.7]
SL003B_1191  [KO:K00948] [EC:2.7.6.1]
SL003B_1194  [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
SL003B_1448  nrdF; Ribonucleoside-diphosphate reductase, beta subunit [KO:K00526] [EC:1.17.4.1]
SL003B_1449  nrdE; Ribonucleotide-diphosphate reductase alpha subunit [KO:K00525] [EC:1.17.4.1]
SL003B_1458  [KO:K01486] [EC:3.5.4.2]
SL003B_1576  purL; Phosphoribosylformylglycinamidine synthase 2 [KO:K23269]
SL003B_1580  purQ; Phosphoribosylformylglycinamidine synthase protein, glutamine amidotransferase domain [KO:K23265]
SL003B_1581  [KO:K23264]
SL003B_1582  purC; Phosphoribosylaminoimidazole-succinocarboxamide synthase A [KO:K01923] [EC:6.3.2.6]
SL003B_1588  [KO:K01756] [EC:4.3.2.2]
SL003B_1622  [KO:K00769] [EC:2.4.2.22]
SL003B_1760  [KO:K00939] [EC:2.7.4.3]
SL003B_1816  [KO:K01768] [EC:4.6.1.1]
SL003B_1899  [KO:K01139] [EC:2.7.6.5 3.1.7.2]
SL003B_1973  [KO:K01768] [EC:4.6.1.1]
SL003B_1998  cpdA; Ser/Thr protein phosphatase family protein [KO:K03651] [EC:3.1.4.53]
SL003B_2175  [KO:K03651] [EC:3.1.4.53]
SL003B_2199  surE; 5'-nucleotidase surE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
SL003B_2247  [KO:K07127] [EC:3.5.2.17]
SL003B_2248  xdhA; Xanthine dehydrogenase, small subunit [KO:K13481] [EC:1.17.1.4]
SL003B_2249  [KO:K13482] [EC:1.17.1.4]
SL003B_2256  [KO:K13485] [EC:4.1.1.97]
SL003B_2257  [KO:K02083] [EC:3.5.3.9]
SL003B_2297  mazG; NTP pyrophosphohydrolase protein MazG [KO:K04765] [EC:3.6.1.9]
SL003B_2347  [KO:K01129] [EC:3.1.5.1]
SL003B_2369  [KO:K00525] [EC:1.17.4.1]
SL003B_2370  [KO:K00525] [EC:1.17.4.1]
SL003B_2379  [KO:K01524] [EC:3.6.1.11 3.6.1.40]
SL003B_2383  purM; putative phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase-like protein [KO:K01933] [EC:6.3.3.1]
SL003B_2384  purN; putative phosphoribosylglycinamide formyltransferas e, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase [KO:K11175] [EC:2.1.2.2]
SL003B_2387  ndk; Nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
SL003B_2399  gmk; Guanylate kinase (GMP kinase) protein [KO:K00942] [EC:2.7.4.8]
SL003B_2414  [KO:K00764] [EC:2.4.2.14]
SL003B_2426  [KO:K03651] [EC:3.1.4.53]
SL003B_2430  guaA; GMP synthase-glutamine amidotransferase protein [KO:K01951] [EC:6.3.5.2]
SL003B_2434  [KO:K00088] [EC:1.1.1.205]
SL003B_2436  [KO:K01524] [EC:3.6.1.11 3.6.1.40]
SL003B_2678  [KO:K01768] [EC:4.6.1.1]
SL003B_2708  [KO:K00955] [EC:2.7.7.4 2.7.1.25]
SL003B_2709  [KO:K00957] [EC:2.7.7.4]
SL003B_2724  [KO:K16842] [EC:3.5.2.5]
SL003B_2891  [KO:K01768] [EC:4.6.1.1]
SL003B_3045  [KO:K00955] [EC:2.7.7.4 2.7.1.25]
SL003B_3046  [KO:K00957] [EC:2.7.7.4]
SL003B_3098  [KO:K11751] [EC:3.1.3.5 3.6.1.45]
SL003B_3332  [KO:K06952] [EC:3.1.3.89]
SL003B_3370  [KO:K01241] [EC:3.2.2.4]
SL003B_3420  [KO:K01945] [EC:6.3.4.13]
SL003B_3485  [KO:K01951] [EC:6.3.5.2]
SL003B_3565  [KO:K01768] [EC:4.6.1.1]
SL003B_3676  [KO:K15778] [EC:5.4.2.8 5.4.2.2]
SL003B_3682  [KO:K01488] [EC:3.5.4.4]
SL003B_3684  deoB; Phosphopentomutase protein [KO:K01839] [EC:5.4.2.7]
SL003B_3687  [KO:K03783] [EC:2.4.2.1]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
pgv00030  Pentose phosphate pathway
pgv00220  Arginine biosynthesis
pgv00250  Alanine, aspartate and glutamate metabolism
pgv00260  Glycine, serine and threonine metabolism
pgv00340  Histidine metabolism
pgv00630  Glyoxylate and dicarboxylate metabolism
pgv00730  Thiamine metabolism
pgv00740  Riboflavin metabolism
pgv00790  Folate biosynthesis
KO pathway
ko00230   

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