KEGG   PATHWAY: phi03430
Entry
phi03430                    Pathway                                
Name
Mismatch repair - Pseudopodoces humilis (Tibetan ground-tit)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
phi03430  Mismatch repair
phi03430

Other DBs
GO: 0006298
Organism
Pseudopodoces humilis (Tibetan ground-tit) [GN:phi]
Gene
102099101  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
102099954  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
102102468  PCNA; proliferating cell nuclear antigen [KO:K04802]
102103592  RPA3; replication protein A 14 kDa subunit [KO:K10740]
102103723  MLH3; DNA mismatch repair protein Mlh3 isoform X2 [KO:K08739]
102104034  MSH6; DNA mismatch repair protein Msh6 [KO:K08737]
102104578  MSH2; DNA mismatch repair protein Msh2 [KO:K08735]
102105649  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
102106846  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
102107278  POLD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
102107300  RFC5; replication factor C subunit 5 isoform X2 [KO:K10756]
102107501  RPA2; replication protein A 32 kDa subunit [KO:K10739]
102109245  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
102109706  EXO1; exonuclease 1 isoform X2 [KO:K10746] [EC:3.1.-.-]
102110901  RFC4; replication factor C subunit 4 isoform X1 [KO:K10755]
102111312  RFC3; replication factor C subunit 3 [KO:K10756]
102112614  PMS2; mismatch repair endonuclease PMS2 [KO:K10858]
102112914  MLH1; DNA mismatch repair protein Mlh1 [KO:K08734]
102113143  MSH3; DNA mismatch repair protein Msh3 [KO:K08736]
102114555  RFC2; replication factor C subunit 2 [KO:K10755]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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