KEGG   PATHWAY: plum00020
Entry
plum00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Photorhabdus laumondii subsp. laumondii DSPV002N
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
plum00020  Citrate cycle (TCA cycle)
plum00020

Module
plum_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:plum00020]
plum_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:plum00020]
plum_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:plum00020]
plum_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:plum00020]
plum_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:plum00020]
Other DBs
GO: 0006099
Organism
Photorhabdus laumondii subsp. laumondii DSPV002N [GN:plum]
Gene
A4R40_07170  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A4R40_15670  hypothetical protein [KO:K01647] [EC:2.3.3.1]
A4R40_12115  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
A4R40_17985  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A4R40_13965  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
A4R40_07195  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A4R40_07200  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A4R40_17990  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A4R40_07210  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A4R40_07205  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A4R40_07185  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A4R40_07190  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A4R40_07175  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A4R40_07180  sdhD; succinate dehydrogenase [KO:K00242]
A4R40_20460  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
A4R40_20465  fumarate reductase [KO:K00245] [EC:1.3.5.1]
A4R40_20470  fumarate reductase subunit C [KO:K00246]
A4R40_20475  fumarate reductase [KO:K00247]
A4R40_11770  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A4R40_22520  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A4R40_00495  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A4R40_18000  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A4R40_17995  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
plum00010  Glycolysis / Gluconeogenesis
plum00053  Ascorbate and aldarate metabolism
plum00061  Fatty acid biosynthesis
plum00071  Fatty acid degradation
plum00190  Oxidative phosphorylation
plum00220  Arginine biosynthesis
plum00250  Alanine, aspartate and glutamate metabolism
plum00280  Valine, leucine and isoleucine degradation
plum00350  Tyrosine metabolism
plum00470  D-Amino acid metabolism
plum00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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