KEGG   PATHWAY: pmoe00020
Entry
pmoe00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas monsensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pmoe00020  Citrate cycle (TCA cycle)
pmoe00020

Module
pmoe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pmoe00020]
pmoe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pmoe00020]
pmoe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pmoe00020]
pmoe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pmoe00020]
pmoe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pmoe00020]
Other DBs
GO: 0006099
Organism
Pseudomonas monsensis [GN:pmoe]
Gene
HV782_009070  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HV782_010000  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
HV782_019890  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
HV782_012035  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HV782_018375  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HV782_018380  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HV782_009095  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HV782_009100  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HV782_000850  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HV782_009105  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HV782_017965  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HV782_009115  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HV782_009110  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HV782_001600  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
HV782_009085  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HV782_009090  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HV782_009075  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HV782_009080  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HV782_022770  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HV782_005300  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HV782_020895  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HV782_011825  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HV782_024335  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HV782_000675  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
HV782_000670  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
HV782_002370  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HV782_003250  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HV782_003245  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pmoe00010  Glycolysis / Gluconeogenesis
pmoe00053  Ascorbate and aldarate metabolism
pmoe00061  Fatty acid biosynthesis
pmoe00071  Fatty acid degradation
pmoe00190  Oxidative phosphorylation
pmoe00220  Arginine biosynthesis
pmoe00250  Alanine, aspartate and glutamate metabolism
pmoe00280  Valine, leucine and isoleucine degradation
pmoe00350  Tyrosine metabolism
pmoe00470  D-Amino acid metabolism
pmoe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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